Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 296 / 1e-93 HXXXD-type acyl-transferase family protein (.1) AT1G24420 251 / 1e-76 HXXXD-type acyl-transferase family protein (.1) AT4G15390 243 / 2e-73 HXXXD-type acyl-transferase family protein (.1) AT3G30280 240 / 2e-72 HXXXD-type acyl-transferase family protein (.1) AT5G47950 237 / 2e-71 HXXXD-type acyl-transferase family protein (.1) AT1G24430 235 / 2e-70 HXXXD-type acyl-transferase family protein (.1) AT5G47980 224 / 2e-66 HXXXD-type acyl-transferase family protein (.1) AT5G23970 209 / 1e-60 HXXXD-type acyl-transferase family protein (.1) AT4G15400 208 / 2e-60 HXXXD-type acyl-transferase family protein (.1) AT1G29880 176 / 9e-47 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030751 [exp] 255 / 7e-78 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 255 / 8e-78 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 224 / 3e-66 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 213 / 2e-62 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 214 / 3e-62 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 206 / 2e-59 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 202 / 3e-58 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 200 / 3e-57 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 201 / 4e-57 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G054100 [exp] 436 / 6e-148 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 431 / 5e-146 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 310 / 5e-99 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 309 / 1e-98 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 304 / 8e-97 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 266 / 5e-82 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 249 / 6e-76 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 247 / 4e-75 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 246 / 8e-75 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 238 / 1e-71 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10036929 pacid=23171111 polypeptide=Lus10036929 locus=Lus10036929.g ID=Lus10036929.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAATCAGTGATCAAAATCAAACAAATTTCATCATCATTCATCAGACCCTCAACTCCAACCCCAACCAACCTCAAAACATTCAACCTCTCCC TTCTGGATCAACTCTCCCCAGTCGCCTACGGTAGCCTGGTTCTCTTCTACAACTCAAAACCCTCATCATCATCATCATCATCAGACTTGAAGTCATCCCT CTCACAGATCCTGAATCAGTTCTACCCACTTGCTGGAAGGATCAAGGACGAATCAGGATCGTCAATCGACTGCAACGACAAAGGGGTGATCTTCACTGAA GCACAAGCCAGCTGCTTTCTGTCTCAGTTCCTCCAACAGCCTGATCCCAATCTACTGAGGAAGCTGATCCCAGTTGAGATTGAATCCCGTGAAGCTTTTC ATGGATGCCCTTTACTTGTCCAGGTAACACGAATATTTGGCTGTTTCGGAACTAAGGTAACTTCTTTTGCCTGTAATGGGTTAGCTGTTGGGGTTTGCAT TTCACAGAAGGTTGCTGATGCAACCACCTTGACCAATTTTTTGGAAGCTTGGTCTGGATTTGCTTCTGGGAAATTCGAATTAGTAGTGCCCTCTTTAGTG TCTGATTCAGCTTCCTCCATTTTCCCACCTGAGAGGCTTTCATTCACTAATAATTATAAGGCTCCTCCTGATGTTGTTCAGTTCAACAGGGAGAGATGTG TTACAAAAAGGTTTGTGTTCCATGCTTCAAAGATTGCAGCTTTGCAAAAAAGTAAGGTCATGGGCGAGACGGTTAGATACCCGACTCGAGTCGAGTCGGT GACTGCATTGATGTGGAAATGTGCAATGAACGCATCGAAATCGAACAACGAGCATTCGATCCTGTCGATTCTGGCTCAGTCTGCTAGCCTGAGGAACAGG CTTTCGACACCATTGCCCGATAACACAATGGGGAACCTTGTGGGCTACTTTGCCTCACAGGCTTTAGAGAGTGACCAGATCGATTTGAGGAGCTTGGTTT GCAGGCTGAGGAAAGGAATGGAGGAGTTTGATGAGAACTATGTGAGGAAGCTTCAAGGGGAAGGCGCATTGAATGCTATCCGAAATTCGTTCGAGGAAGC CGGGAGCTTGCTCCAGGGAGGGAATGTGGAGCTTTATATCAGTACAAGTCTGTGTAAGTTCCCGTTTTATGGCGTGGATTTCGGGTCGGGGAAGCCTTGT TGGGTTAGTGTCCCGACCGGGGCTAGCTACAAGAACTTTATGGCGACGTGGGATGCGAAAGATGGCGATGGGATCGAAGCTTGGGTTACTTTGAGTGAAG AAGACATGTTCTTTTTTGAGAAGGATAGAGAGTTGCTTGATTATGCTTGTTCGAATCCTAGTGCTTTGGAGGGTTTCAGAATTTCTCCCCGACAAGGGGT ACTGAGAGTTCGAGAGTTCACATTAGCAGAGATTGAGCACTTTGTCGACCCCGAAGACCAGACACACCCAAAGTTTGCTAAAGTTGCCAATTTAGAGTTC CTGATGTTCCCTAGGGAAGAGCAGATGTCTGGGCAGTCAGCAAAGCTAATTCAACTTGGCAATGCCTATCAAAGGCGATGCCAGAAAAAAAAAGCCATGG AAATGAAGGCTGCTCTCGAATCCAAAGGGGAGGCGGAGTTGTACGCCTGCACTCTCAGCAAAAACGTGGTCATCAAGAAGATCATGGTCTCTATCTCTAA GGAGATGAAAAAGGAACACCAAAGGGTCTTCACACCATCAGTCATCGAGCCATCTTTCGGCATTGGACGCATCATATACTGCCTATACGAACACTCCTTC TACACCAGGCCTAGCAAAGCAGGGGACGAACAGCTGAATGTCTTCCGGTTCAATCCTCTCGTCGCCCCCATCAAATGCACCGTGTTCCCCCTCGTCCAGA ACCAACAGTTTGAACCAACAGTTTGA
AA sequence Show only first row Show all	>Lus10036929 pacid=23171111 polypeptide=Lus10036929 locus=Lus10036929.g ID=Lus10036929.BGIv1.0 annot-version=v1.0 MEQESVIKIKQISSSFIRPSTPTPTNLKTFNLSLLDQLSPVAYGSLVLFYNSKPSSSSSSSDLKSSLSQILNQFYPLAGRIKDESGSSIDCNDKGVIFTE AQASCFLSQFLQQPDPNLLRKLIPVEIESREAFHGCPLLVQVTRIFGCFGTKVTSFACNGLAVGVCISQKVADATTLTNFLEAWSGFASGKFELVVPSLV SDSASSIFPPERLSFTNNYKAPPDVVQFNRERCVTKRFVFHASKIAALQKSKVMGETVRYPTRVESVTALMWKCAMNASKSNNEHSILSILAQSASLRNR LSTPLPDNTMGNLVGYFASQALESDQIDLRSLVCRLRKGMEEFDENYVRKLQGEGALNAIRNSFEEAGSLLQGGNVELYISTSLCKFPFYGVDFGSGKPC WVSVPTGASYKNFMATWDAKDGDGIEAWVTLSEEDMFFFEKDRELLDYACSNPSALEGFRISPRQGVLRVREFTLAEIEHFVDPEDQTHPKFAKVANLEF LMFPREEQMSGQSAKLIQLGNAYQRRCQKKKAMEMKAALESKGEAELYACTLSKNVVIKKIMVSISKEMKKEHQRVFTPSVIEPSFGIGRIIYCLYEHSF YTRPSKAGDEQLNVFRFNPLVAPIKCTVFPLVQNQQFEPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	1.0	0.9398
AT1G25420			Regulator of Vps4 activity in ...		Lus10041442 [exp]	1.4	0.9385
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	4.6	0.9132
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10009717 [exp]	5.0	0.9092
AT3G20920			translocation protein-related ...		Lus10030136 [exp]	5.9	0.9049
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	7.9	0.9029
AT4G38640			Plasma-membrane choline transp...		Lus10034492 [exp]	10.0	0.9128
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	12.0	0.9048
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	14.0	0.8997
AT4G33420			Peroxidase superfamily protein...		Lus10029543 [exp]	16.2	0.8642

Compare expression of checked genes

Lus10036929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.