Plant FIBer expression Database

Lus10036930 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29880 92 / 4e-23 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029203
[exp]
124 / 3e-34 AT1G29880 1067 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Lus10008792
[exp]
116 / 1e-31 AT1G29880 1057 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Lus10042096
[exp]
113 / 2e-30 AT1G29880 1174 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G067800
[exp]
99 / 2e-25 AT1G29880 1203 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Potri.003G162300
[exp]
94 / 8e-24 AT1G29880 1192 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0458 IIaaRS-ABD PF03129 HGTP_anticodon Anticodon binding domain
Representative CDS sequence
>Lus10036930 pacid=23171305 polypeptide=Lus10036930 locus=Lus10036930.g ID=Lus10036930.BGIv1.0 annot-version=v1.0
ATGGACGTCAAAAGTACCTCGATAGGGAAGCGGTACGCTAGAGCAGACGAGTTGGGCGTACCCTTTGCCATCACGGTTGACTCAGCTGATTCGGTTACAA
TTAGGGAGAAGGACATCAAGGATCAGATCCGAGTAAAGCTGGAAGATGTGGTGTCGGTTGTGCAGTCGCTATGTGATGGCCAGACCACATGGGAATTGAA
CAACACGCAACGGCAGACACCGAAGCAGAACACTGAAGAATCTGTGACGGAAGGTGCCGTAGCCGAAAGGTATCCATTGCAATTTTCTTTGGCCAAAGGT
TTCTAA
AA sequence
>Lus10036930 pacid=23171305 polypeptide=Lus10036930 locus=Lus10036930.g ID=Lus10036930.BGIv1.0 annot-version=v1.0
MDVKSTSIGKRYARADELGVPFAITVDSADSVTIREKDIKDQIRVKLEDVVSVVQSLCDGQTTWELNNTQRQTPKQNTEESVTEGAVAERYPLQFSLAKG
F

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G29880 glycyl-tRNA synthetase / glyci... Lus10036930
[exp]
0 1
AT1G04985 unknown protein Lus10015157
[exp]
18.8 0.8401
AT2G42010 PLDBETA1 phospholipase D beta 1 (.1) Lus10042282
[exp]
24.2 0.8298
AT1G08510 FATB fatty acyl-ACP thioesterases B... Lus10000365
[exp]
25.9 0.8094
Lus10016602
[exp]
27.5 0.7920
AT4G38070 bHLH basic helix-loop-helix (bHLH) ... Lus10002649
[exp]
43.5 0.8074
AT5G06730 Peroxidase superfamily protein... Lus10008173
[exp]
43.6 0.8339
AT1G16670 Protein kinase superfamily pro... Lus10042460
[exp]
46.3 0.8237
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Lus10029692
[exp]
51.6 0.8168
AT5G62750 unknown protein Lus10004267
[exp]
57.2 0.8189
AT2G40600 appr-1-p processing enzyme fam... Lus10034225
[exp]
64.3 0.8058

Lus10036930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.