Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27320 468 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14310 455 / 4e-159 ATCXE16 carboxyesterase 16 (.1) AT5G27320 127 / 2e-33 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 127 / 3e-33 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 127 / 6e-33 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 119 / 2e-30 ATCXE20 carboxyesterase 20 (.1) AT2G45600 108 / 2e-26 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 103 / 1e-24 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 101 / 5e-24 ATCXE18 carboxyesterase 18 (.1) AT3G48700 100 / 9e-24 ATCXE13 carboxyesterase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037056 [exp] 758 / 0 AT3G27320 476 / 5e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022326 [exp] 428 / 6e-148 AT3G27320 660 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 124 / 3e-32 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10002254 [exp] 119 / 4e-30 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10036168 [exp] 117 / 1e-29 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000928 [exp] 117 / 2e-29 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 115 / 1e-28 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10024087 [exp] 114 / 3e-28 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10015989 [exp] 113 / 3e-28 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G180600 [exp] 538 / 0 AT3G27320 568 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G053700 [exp] 531 / 0 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G180500 [exp] 509 / 0 AT3G27320 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G032400 [exp] 135 / 4e-36 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 135 / 5e-36 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 129 / 7e-34 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.005G040600 [exp] 129 / 7e-34 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 126 / 9e-33 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 124 / 5e-32 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 122 / 2e-31 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10036931 pacid=23171190 polypeptide=Lus10036931 locus=Lus10036931.g ID=Lus10036931.BGIv1.0 annot-version=v1.0 ATGACTCCCAGCATCATCATGATCTCCAGCTTAATCGCCAATTTGAATTCAATCGTCGCCAAGTACCAGCACAAGCACCTCCTCCAAACCCTAATCCAAC AACAACAGCGACAGCAAAATCCAAATCCGAATCAAAACCCATTCGGAATCACTTCCCGGGCGTCTCAATCGACCGCAGCCAGCAATCCATCTTTCGTCAA CGGCGTAGCCACGAAAGATCTTCACATAGACCCGCTTTCGTCGGTCTCTGTTAGAATCTTTCTTCCTGACACGGTCGTCTCTCCTCAATCGCGGGTTTCT GATCGGTACAGTGGGTACGCTCCTTCCGGGAAGAAGCTGAGGAAAGTTCCTTTGGTTCTGCAGTTTCACGGAGGTGGGTTTGTGAGCGGGAGTAATGAGT CAGGGGAGAATGATTTGTTCTGTAGGAAGGTTGCGAAGCTGTGGGATGCGGTAGTTGTTTCCGTAGGGTATAGATTGGCGCCGGAGAGTAAGTATCCGGC AGCGTTTGAGGATGGGGTGAAGGTGCTCAATTGGTTGGTGAAGCAGGCGAATTTGGGGGTTTATGGGAGGTTAGGGTTTGAGAGTGGGAATTTTGATAGA TTTGGTGTGTCTATGGTTGAGCCTTGGCTGGCTGCTCATGGAGATCCTTCTAGGTGTGTGCTCCTTGGGGCAAGTTCCGGTGCAAACATAGCAAACTATG TGGCGCAAAAGGCCGTGGAGGAAGGCACTCGGTTAAGTCCTGTGAAGATAGTGGCACAAGTTCTGATGTATCCATTTTTCATCGATATTACTCCATCATC ACATTGTGAAACGAAGTTGGCAACCTCATATTTCTACGACAAGGCTATGTGTAGTACGGCATGGAAGCTGTTCCTTCCAGAAGGAGAATTCAACCTACAT CACGCAGCTGCCAACCCTTTCATTCCTGGGAAACACCCACCTCTAAAGCACATGCCACCAACTCTGACAGTTGTTGCAGAGCATGATTTGATGATACACA GCGCTATTGCATACTCGGAGGAGCTACGGCGGGTCAATGTGGATGCCCCCCTTCTCGAATATAAGAACGTCACTCATGACTTTGCCACTCTCGGCGTGCT TCTCCAGACGCCACAGGCTCAGGCTTGTGCAGACGATATCGCCATTTGGGTCAAGAAGTACATATCAGTTCGCGGCAATGAGCTTTCTTACTAA
AA sequence Show only first row Show all	>Lus10036931 pacid=23171190 polypeptide=Lus10036931 locus=Lus10036931.g ID=Lus10036931.BGIv1.0 annot-version=v1.0 MTPSIIMISSLIANLNSIVAKYQHKHLLQTLIQQQQRQQNPNPNQNPFGITSRASQSTAASNPSFVNGVATKDLHIDPLSSVSVRIFLPDTVVSPQSRVS DRYSGYAPSGKKLRKVPLVLQFHGGGFVSGSNESGENDLFCRKVAKLWDAVVVSVGYRLAPESKYPAAFEDGVKVLNWLVKQANLGVYGRLGFESGNFDR FGVSMVEPWLAAHGDPSRCVLLGASSGANIANYVAQKAVEEGTRLSPVKIVAQVLMYPFFIDITPSSHCETKLATSYFYDKAMCSTAWKLFLPEGEFNLH HAAANPFIPGKHPPLKHMPPTLTVVAEHDLMIHSAIAYSEELRRVNVDAPLLEYKNVTHDFATLGVLLQTPQAQACADDIAIWVKKYISVRGNELSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	0	1
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10008066 [exp]	4.0	0.9153
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	6.2	0.8753
					Lus10039442 [exp]	7.0	0.8950
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	8.8	0.9146
AT3G28210		SAP12, PMZ	STRESS-ASSOCIATED PROTEIN 12, ...		Lus10039448 [exp]	14.5	0.8851
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	16.0	0.9148
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	18.4	0.8751
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	20.0	0.8657
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	20.9	0.9073
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	21.1	0.8841

Compare expression of checked genes

Lus10036931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.