Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47160 225 / 1e-73 RING/U-box superfamily protein (.1.2) AT5G01520 222 / 1e-72 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT5G58787 221 / 4e-72 RING/U-box superfamily protein (.1.2) AT1G13195 216 / 5e-70 RING/U-box superfamily protein (.1.2) AT1G24440 213 / 4e-69 RING/U-box superfamily protein (.1) AT4G23450 44 / 4e-05 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT2G26350 44 / 4e-05 PEX10, ATPEX10 peroxin 10 (.1) AT5G01960 44 / 5e-05 RING/U-box superfamily protein (.1) AT1G18780 44 / 5e-05 RING/U-box superfamily protein (.1) AT5G37200 43 / 6e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037053 [exp] 469 / 6e-170 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 384 / 2e-136 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10011390 [exp] 382 / 2e-135 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 236 / 5e-78 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 232 / 2e-76 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10006253 [exp] 224 / 5e-73 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10036937 [exp] 222 / 3e-72 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10001209 [exp] 211 / 2e-68 AT3G47160 369 / 9e-131 RING/U-box superfamily protein (.1.2) Lus10005859 [exp] 210 / 4e-68 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053000 [exp] 358 / 2e-126 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.012G093300 [exp] 254 / 6e-85 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.004G041200 [exp] 249 / 3e-83 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.015G089800 [exp] 247 / 2e-82 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.011G050700 [exp] 243 / 1e-80 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 237 / 1e-78 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 236 / 2e-78 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 229 / 1e-75 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.010G052700 [exp] 228 / 6e-75 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.008G181300 [exp] 228 / 6e-75 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10036934 pacid=23171257 polypeptide=Lus10036934 locus=Lus10036934.g ID=Lus10036934.BGIv1.0 annot-version=v1.0 ATGTGGGAGAAACAGTCACACCGATCATCATCTTCCTCTTCATTCAGAGAATCGCTCAAATCCCTTGAAGCTGATATTCAACATGCCAATACCTTGGCAG CTTCTTTACCTGGAGATTATGGCGGGGATTGTGTACAGATGAGGCTATCATTCAGTCCAATTGCTCCTTACCTTCTGTTCTTAGTTGAATGGATGGATTA CAGTTGTACAGATGCCCTCCCTACGTACTTGGGCCTTCTCCATGTCCTTGTTTACAAAATTTACATCGATGGAGTGCCGACATTGTCTTGTAAAGAAAGG AGGGCCAGTCTAAGGGAGTTCTATGCTATTCTATACCCTTCACTCAGGCAGCTTGAAGGCCAATTTCCGGAGTCAGACCATAAGAGAAGTCGAGGCAGTG AAGTTTTAACCACCAGGAAGCGAGCAGAAGACAGGAGGAAGTTAGCCGATAACGAATTCGAAAGAGACGATGAATGTGGGATATGCATGGAGACTGGTAG CAAGATGGTATTGCCCGGCTGCGGCCACTCCTTGTGCATGAGCTGCTTCCACGATTGGAACAATAGATCACAATCATGCCCTTTTTGCCGCGGCAGCTTG AAGAGAGTGAGGTCTATAGACTTGTGGGTTCTAATTAGCAATGGAGATATAGTTGATGCAGCAACTCTGGCAGAAGAGAACCTTAGGCGTTTCTACCTTT ATGTTGAGAACTTGCCCCTTGTAATGCCTGAGATCTCTCATGCCGTTCTGTTTGATTATATGATCTGA
AA sequence Show only first row Show all	>Lus10036934 pacid=23171257 polypeptide=Lus10036934 locus=Lus10036934.g ID=Lus10036934.BGIv1.0 annot-version=v1.0 MWEKQSHRSSSSSSFRESLKSLEADIQHANTLAASLPGDYGGDCVQMRLSFSPIAPYLLFLVEWMDYSCTDALPTYLGLLHVLVYKIYIDGVPTLSCKER RASLREFYAILYPSLRQLEGQFPESDHKRSRGSEVLTTRKRAEDRRKLADNEFERDDECGICMETGSKMVLPGCGHSLCMSCFHDWNNRSQSCPFCRGSL KRVRSIDLWVLISNGDIVDAATLAEENLRRFYLYVENLPLVMPEISHAVLFDYMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47160			RING/U-box superfamily protein...		Lus10036934 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	1.0	0.9604
AT3G23270			Regulator of chromosome conden...		Lus10035397 [exp]	4.1	0.9256
AT2G28080			UDP-Glycosyltransferase superf...		Lus10016126 [exp]	7.1	0.9114
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	7.5	0.9310
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	10.9	0.9491
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	12.8	0.9472
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	14.6	0.9459
AT3G02420			unknown protein		Lus10034084 [exp]	16.6	0.8935
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	17.3	0.9232
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10022421 [exp]	17.5	0.9417

Compare expression of checked genes

Lus10036934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.