Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67720 1275 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 836 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT2G14440 448 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 439 / 8e-140 Leucine-rich repeat protein kinase family protein (.1.2) AT1G49100 439 / 1e-139 Leucine-rich repeat protein kinase family protein (.1) AT1G05700 436 / 8e-139 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G29990 436 / 2e-138 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G29000 432 / 3e-137 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 429 / 4e-136 Leucine-rich repeat protein kinase family protein (.1) AT2G19190 426 / 1e-134 FRK1 FLG22-induced receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037051 [exp] 1801 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023166 [exp] 850 / 0 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 849 / 0 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 845 / 0 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 458 / 6e-147 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10038251 [exp] 305 / 4e-91 AT4G29990 560 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10038174 [exp] 290 / 8e-87 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 291 / 9e-85 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 288 / 2e-83 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052800 [exp] 1493 / 0 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 1439 / 0 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 853 / 0 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 838 / 0 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.007G004700 [exp] 425 / 7e-134 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094200 [exp] 297 / 1e-90 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G242700 [exp] 291 / 3e-84 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094600 [exp] 277 / 2e-79 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 275 / 1e-78 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.009G120400 [exp] 271 / 2e-77 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10036935 pacid=23171156 polypeptide=Lus10036935 locus=Lus10036935.g ID=Lus10036935.BGIv1.0 annot-version=v1.0 ATGGGTCTTGTTCCTATGTTCAGTACCCATTTCATCCTTCTTTCTCTGCTCTTAGTTTCTCCTGCTCTCTCCCAACTTTCAGAGTTTGTGAGCATAGACT GTGGAGGAACAAGCAACTACAGTGACTCAATCACAGGACTACAATGGGTTTCAGACGCCACATTAATGAACTACGGAAAATCAGTGGAGGTCCAGAACCC AGATGGGAACTTGGAGCAGTACAAAAGGAGGAGAGATTTCCCCATAGACAGCACCAAAAAATACTGCTACAATATGGCGACTCTGGAGAGAAGGCGGTAC CTGATTCGAGCTACATTCCAGTATGGAAACTTGGGGGATCAGGATGCATACCCCAAATTTGATCTCTACTTGGATGCAACCAAATGGTCTACTGTCACGA TTTTGGAGTCGGCTAGAGTGTATGCCAAGGAAATGATCATAAGGGCACCTTCTAGCTCTGTTGATGTTTGCATATGCTGTGCAACCACTGGCTCTCCGTT TATCTCGACTCTTGAGCTGAGGCCGCTCAATCTTTCGATGTACGCGACTGATTTCGAGGACAGTTTCTTCCTCAAGGTTGCTGCAAGGATGAACTTTGGT GCCTTGGACAAGGATGCTATAAGGTATCCTGATGACCCATATGACAGGATTTGGGATTCAGATCTCGACAGAAGACAAAACTACTTAGTAGGTGTAGCTC CAGGGACGATGAGGATCAATACAACTAAAGACATATGGGTTAGTACTAGAGAGTACCCTCCAGTGAAAGTAATGCAGACTGCAGTAGTTGGCACAGAAGG GACACTAAGCTACAGGCTAAACCTTGAGGACTTCCCAGCAAACGCAAGAGCCTACGCGTACTTTGCTGAGATCGAGGATCTGGGTCCAAATGAGACGAGG AAGTTCAAGCTGACACAGCCTTATTTCCCGGATTACAGCAATGCAGTGGTGAACATCATGGAGAATGGTAATGGCACCAACAGCCTATACGAGCCTAGCT ACATGAATGTGAGCCTCGAGTTTGTGCTCTCGTTCTCATTTGTCAAGACTCGCGATTCCTCTCGTGGACCGCTCCTCAATGCCATGGAGATCAGCAAGTA CCTGCAGATTGCTGCTAAGACTGACATCCAAGACTTGAATGTTCTTAACGCGTTTCGATCCATGGCTCCCGGAAGCTCGTGGACTAGTGATGGAGGTGAC CCTTGTGTGCCAGCTCATTGGGAATGGGTGACTTGTGGGGTTACTTCTCCACCAAGGATCATAAAAATTTCCTTGTCAGGCAAGAACTTGAGAGGAGAGA TTCCACCTGAGATCAACCACATGAGACAATTGGAAGAGCTGTGGCTGGATGGGAACTTGCTCACAGGGCCAATCCCAGACATAAGCAATCTTGTTAACCT TAAAATCATGCATTTAGAGAACAACAAACTCAGTGGTTCACTGCCAAAGTACCTAGCAAGCTTGCCAAACTTGCATGAATTGTACATACAGAACAATGGT TTCACTGGCAATATACCTCCAGCACTGCTGACTGGCAAAGTAATCATCAACTATGAACACAATCCAGGTCTGCATAAAGAGGCAGAAAAGAAGCAGCACT TTAGATTGGTACTTGGGATCTCCATTGGCATACTTGCAGCACTAACACTTCTCCTTTTAGCAAGCCTGGTGTGCTTGCAGCGTCTTCGTCAAAAAAACTC TAGGCAAACAACTAATGAACAAGAACTACTACCAGGTCACTCAATGAGAACAAGTGCCAAGCTTTCATCTGCCTATTCTGTTTCAAGAGGTTGGCATCTA ACAGAAGATGGAATTTCATACTTCATCCCACTCTCCAAAATCGAAGGAGCTACCAACAACTTCGCGAAGAAAATCGGTAAAGGAAGCTTCGGGACAGTGT ATTATGGCCAGATGGAAGATGGAAAGGAGGTAGCTGTCAAGATCATGGCTGATTCCTGCACCAACCTGACACAACAATTTGTCACCGAGGTAGCCTTGCT GTCAAGAATTCATCACAGGAACTTGGTTCCATTAATAGGATACTGTGAAGAACAGAACCAAAGGATCCTTATCTATGAATACATGCACAATGGGACACTA AGAGATCACATCCATGGTTCAGTTAATCACAAGCGATTAGACTGGATGGCACGGCTACAGGTTGCTGAAGATTCAGCTAAAGGCCTCGAATACTTGCATA CCGGGTGCAATCCCAGCATCATACACAGAGATGTGAAAACCAGCAACATTCTGCTGGACATCAACATGAGAGCAAAAGTCTCGGACTTTGGTCTCTCGAG ACAAGCTGAAGAGGACTTGACACATGTCTCGAGCGTCGCACGTGGCACAGTCGGTTATCTGGACCCTGAGTACTATGCAAACCAGCAGTTGACAGAAAAA AGTGATGTCTACAGCTTTGGTGTGGTACTTCTAGAACTCATCTCAGGGAAAAAACCAGTGTCAACAGAAGACTTTGGTGCAGAACTCAACATTGTCCATT GGGCAAGGGCTCTGATAAGAAAAGGGGATGTAATGAGCATAATGGACTCATTACTGATAGGGAATGCAAAGATTGAATCAGTGTGGAGGGTAGCAGAAGT AGCAATCCAATGCGTCGAGCTCCGATCGGTTTCAAGACCCAAGATGCAGGAGATCATAGTGGCAATACAGGAAGCTGTCAAGATAGAGAAAGGGTTTGAT GGTAGACAGAAGCTTATAGGCTCAGATAGCTCCTCCACCAAGGGACAGTCTTCAAGGAAAACGTTGCTAACAAGCTTTCTCGAAATCGATCAAAGCCCGG ACCTTTCCAATGGTTCTGGCCTTGTCCCTTCTGCTAGATGA
AA sequence Show only first row Show all	>Lus10036935 pacid=23171156 polypeptide=Lus10036935 locus=Lus10036935.g ID=Lus10036935.BGIv1.0 annot-version=v1.0 MGLVPMFSTHFILLSLLLVSPALSQLSEFVSIDCGGTSNYSDSITGLQWVSDATLMNYGKSVEVQNPDGNLEQYKRRRDFPIDSTKKYCYNMATLERRRY LIRATFQYGNLGDQDAYPKFDLYLDATKWSTVTILESARVYAKEMIIRAPSSSVDVCICCATTGSPFISTLELRPLNLSMYATDFEDSFFLKVAARMNFG ALDKDAIRYPDDPYDRIWDSDLDRRQNYLVGVAPGTMRINTTKDIWVSTREYPPVKVMQTAVVGTEGTLSYRLNLEDFPANARAYAYFAEIEDLGPNETR KFKLTQPYFPDYSNAVVNIMENGNGTNSLYEPSYMNVSLEFVLSFSFVKTRDSSRGPLLNAMEISKYLQIAAKTDIQDLNVLNAFRSMAPGSSWTSDGGD PCVPAHWEWVTCGVTSPPRIIKISLSGKNLRGEIPPEINHMRQLEELWLDGNLLTGPIPDISNLVNLKIMHLENNKLSGSLPKYLASLPNLHELYIQNNG FTGNIPPALLTGKVIINYEHNPGLHKEAEKKQHFRLVLGISIGILAALTLLLLASLVCLQRLRQKNSRQTTNEQELLPGHSMRTSAKLSSAYSVSRGWHL TEDGISYFIPLSKIEGATNNFAKKIGKGSFGTVYYGQMEDGKEVAVKIMADSCTNLTQQFVTEVALLSRIHHRNLVPLIGYCEEQNQRILIYEYMHNGTL RDHIHGSVNHKRLDWMARLQVAEDSAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEK SDVYSFGVVLLELISGKKPVSTEDFGAELNIVHWARALIRKGDVMSIMDSLLIGNAKIESVWRVAEVAIQCVELRSVSRPKMQEIIVAIQEAVKIEKGFD GRQKLIGSDSSSTKGQSSRKTLLTSFLEIDQSPDLSNGSGLVPSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	0	1
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	1.0	0.9574
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	2.0	0.9369
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	2.4	0.9275
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	3.9	0.9029
AT5G66440			unknown protein		Lus10023551 [exp]	4.2	0.8992
AT2G01913			unknown protein		Lus10035103 [exp]	4.6	0.8915
AT1G67790			unknown protein		Lus10034566 [exp]	8.9	0.9126
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	8.9	0.8829
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	9.5	0.8720
AT5G52430			hydroxyproline-rich glycoprote...		Lus10028779 [exp]	10.7	0.8284

Compare expression of checked genes

Lus10036935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.