Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22660 195 / 6e-61 rRNA processing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037050 [exp] 349 / 1e-121 AT3G22660 220 / 4e-71 rRNA processing protein-related (.1) Lus10031698 [exp] 319 / 3e-109 AT3G22660 316 / 3e-108 rRNA processing protein-related (.1) Lus10031120 [exp] 286 / 1e-94 AT3G22660 289 / 9e-96 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G131200 [exp] 259 / 8e-86 AT3G22660 300 / 5e-102 rRNA processing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05890 [flax] [poplar] Ebp2 Eukaryotic rRNA processing protein EBP2
Representative CDS sequence Show only first row Show all	>Lus10036936 pacid=23171064 polypeptide=Lus10036936 locus=Lus10036936.g ID=Lus10036936.BGIv1.0 annot-version=v1.0 ATGAAAGACGAGGATCTAATAGAAGATGACGATGATGTAGCTTATGAAGATAACAAAGAATTCAGCGGTGATTCTTCGTCCGACTCAGATCAGGAAGGTG ACGTGAAATTGGACGTCCCTTCCACGGACGCGATATTCAACAGAGACGGTCTCAACGACAAGCTACAAGAGATCAGCTGGCCGGATCATGCAGGTTGGAT CCACAAACTCTCCCTCGAGATCAACCAGGAGCAAGAAGTTGATGTGAACGACGACCTCACTCGCGAGACAGCATTCTACATGCAGGCATTGGAAGGCACG AGGAGGGCGTTCGAGAAGTTCGAGACGATGGGGCTACCCTTTTTAAGGCCCCCCGATTACCACGCTGAAATGGGGAAGTCGGACGCCCATATGGTGAAGA TCAAGAACCGGCTCCTGGCGGAGAAGAGGAACACGGAGGAAGCCGAAGAGAGAAGGAAAGCCAGGGAGGCTAAGAATCTCTCAAAGGAGGTTCAAGCGCA GAAGCAGAAGGAGCGAGCTTCACAGAAGAAAGGAGAGATTGAGACAGTTAAGAATTCGAGGAAGCAAAGTCAGGAAAGTGGGTTTGCTCCTGGCGAGAAC GATGAGCTCGATTTGGATCTCGGAGAAGTGGGGAAGAAGCCGTTTGAGAAGTCGAACAAGCAACATCCCGGGGTGGGTCATGGGGACAGGTCGGGTGGCA AGGGGAGGAAGTCATTGAAGAGCAAGCCGGATAAGAAGGTGATGAAGAGGGACAGGAAAGACTCGAAATTCGGGTTCGGTGGGAGGAAAGGGATGAAGAA GCAGAACACTGCTGATACTACTGATGATGGTTTCAAAGGGTTTAAGAAAACTGGCGCTGAAGGGAATAAGAGAAGGAAGCAGTGA
AA sequence Show only first row Show all	>Lus10036936 pacid=23171064 polypeptide=Lus10036936 locus=Lus10036936.g ID=Lus10036936.BGIv1.0 annot-version=v1.0 MKDEDLIEDDDDVAYEDNKEFSGDSSSDSDQEGDVKLDVPSTDAIFNRDGLNDKLQEISWPDHAGWIHKLSLEINQEQEVDVNDDLTRETAFYMQALEGT RRAFEKFETMGLPFLRPPDYHAEMGKSDAHMVKIKNRLLAEKRNTEEAEERRKAREAKNLSKEVQAQKQKERASQKKGEIETVKNSRKQSQESGFAPGEN DELDLDLGEVGKKPFEKSNKQHPGVGHGDRSGGKGRKSLKSKPDKKVMKRDRKDSKFGFGGRKGMKKQNTADTTDDGFKGFKKTGAEGNKRRKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22660			rRNA processing protein-relate...		Lus10036936 [exp]	0	1
AT4G39300			unknown protein		Lus10026340 [exp]	2.4	0.8403
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10040717 [exp]	2.4	0.8609
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	3.9	0.8490
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10035541 [exp]	4.5	0.8513
					Lus10024538 [exp]	5.3	0.8466
					Lus10033670 [exp]	11.9	0.7575
AT5G11500			unknown protein		Lus10038625 [exp]	12.0	0.8343
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	15.0	0.8336
AT3G15460			Ribosomal RNA processing Brix ...		Lus10014058 [exp]	15.7	0.7642
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10014585 [exp]	17.7	0.8201

Compare expression of checked genes

Lus10036936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.