Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24440 333 / 4e-116 RING/U-box superfamily protein (.1) AT1G13195 326 / 3e-113 RING/U-box superfamily protein (.1.2) AT5G01520 221 / 2e-72 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 213 / 8e-69 RING/U-box superfamily protein (.1.2) AT5G58787 199 / 2e-63 RING/U-box superfamily protein (.1.2) AT2G20030 46 / 1e-05 RING/U-box superfamily protein (.1) AT3G48030 44 / 4e-05 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G05130 44 / 6e-05 DNA/RNA helicase protein (.1) AT1G04360 44 / 8e-05 RING/U-box superfamily protein (.1) AT1G23980 42 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006253 [exp] 518 / 0 AT1G13195 336 / 4e-117 RING/U-box superfamily protein (.1.2) Lus10006448 [exp] 363 / 5e-128 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1) Lus10011391 [exp] 362 / 1e-127 AT1G24440 319 / 4e-111 RING/U-box superfamily protein (.1) Lus10011390 [exp] 233 / 6e-77 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 233 / 1e-76 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 228 / 8e-75 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 224 / 3e-73 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 221 / 2e-72 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 220 / 1e-71 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181300 [exp] 395 / 7e-141 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 392 / 3e-139 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 342 / 1e-119 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.015G089800 [exp] 331 / 3e-115 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.016G115300 [exp] 235 / 1e-77 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.010G053000 [exp] 234 / 5e-77 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 233 / 1e-76 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 232 / 2e-76 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 226 / 3e-74 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 219 / 1e-71 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036937 pacid=23171295 polypeptide=Lus10036937 locus=Lus10036937.g ID=Lus10036937.BGIv1.0 annot-version=v1.0 ATGGGGATGGAGATGATGTATTTGGAGTTGGGGAGGTCCTCTTCTTACCAGGACTCCCTCAAAGTTCTTGAAGCTGATATTCAGTATGCTAATACTCTGG CTGCTGAAATCCCTAGAGGGAAAGGTGGTTCATATCTTCAAATGAAGCTAGTCTACAATCAATGGGCTCCCTTTTTCTTGTTCTTGCTTCAGAGGATAGA TTCCTCTTGCGTCTGTTTACTCCCTAGATATCTCAATCTCTTCCACGTCCTTGTTTACAAGGTTCACGACAGCATATCGCGGGTTTCTGCTCATGGAAGG AAAGCAACAGTCAAGGAGTTCTATGGTGTCATCTTACCTTCCCTTCAAAGGATTCACAGCAACTTAGATGAATTCAATATGGTGCTAGATGTTAAGCAAG GGGTTCGAGCAATCGAGAGCTCAAAAGTAAAGAAGATGGATGGCGATCATAAGCTTATAAGCATCGATCTGGAGAGGGAAGATGAATGTGGCATCTGCTT GGAGCCTTGCACCAAGATGGTTTTGCCTAATTGTTGTCATGCAATGTGCATCAAGTGCTACCGCAATTGGAACACGAGGTCGGAGTCGTGTCCATTCTGT CGCGGAAGCTTGAAGAGAGTCAACTCAGAAGACCTATGGGTACTCACTTGCAACAATGATGTGGTTGATACTATGCAGGTTACGCGGGAAGACCTCTTGC GATTCTATCTGTACATCGATCGCCTGCCAAAAGACTACCCGGATGCGCTCTTCTTAGTGTACTATGAGTATCTACTCTGA
AA sequence Show only first row Show all	>Lus10036937 pacid=23171295 polypeptide=Lus10036937 locus=Lus10036937.g ID=Lus10036937.BGIv1.0 annot-version=v1.0 MGMEMMYLELGRSSSYQDSLKVLEADIQYANTLAAEIPRGKGGSYLQMKLVYNQWAPFFLFLLQRIDSSCVCLLPRYLNLFHVLVYKVHDSISRVSAHGR KATVKEFYGVILPSLQRIHSNLDEFNMVLDVKQGVRAIESSKVKKMDGDHKLISIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTRSESCPFC RGSLKRVNSEDLWVLTCNNDVVDTMQVTREDLLRFYLYIDRLPKDYPDALFLVYYEYLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	1.4	0.9598
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	4.9	0.9585
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	6.6	0.9521
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	6.7	0.9523
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	6.9	0.9494
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	8.8	0.9490
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	10.1	0.9376
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	11.0	0.9505
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	13.1	0.9342
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	16.4	0.9388

Compare expression of checked genes

Lus10036937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.