Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24460 800 / 0 TNO1 TGN-localized SYP41 interacting protein, unknown protein AT3G26085 275 / 9e-83 CAAX amino terminal protease family protein (.1.2.3) AT4G31570 74 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006252 [exp] 3039 / 0 AT1G24460 937 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10006450 [exp] 1719 / 0 AT1G24460 902 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10011394 [exp] 823 / 0 AT1G24460 415 / 3e-126 TGN-localized SYP41 interacting protein, unknown protein Lus10011393 [exp] 726 / 0 AT1G24460 375 / 7e-112 TGN-localized SYP41 interacting protein, unknown protein Lus10006251 [exp] 498 / 1e-161 AT3G26085 298 / 4e-101 CAAX amino terminal protease family protein (.1.2.3) Lus10026934 [exp] 106 / 3e-22 AT4G31570 680 / 0.0 unknown protein Lus10020133 [exp] 102 / 5e-21 AT4G31570 1315 / 0.0 unknown protein Lus10009250 [exp] 0 / 1 AT1G24460 80 / 1e-21 TGN-localized SYP41 interacting protein, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052600 [exp] 1494 / 0 AT1G24460 1116 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Potri.008G181400 [exp] 325 / 2e-100 AT3G26085 308 / 1e-104 CAAX amino terminal protease family protein (.1.2.3) Potri.018G008600 [exp] 111 / 5e-24 AT4G31570 1464 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10036938 pacid=23171335 polypeptide=Lus10036938 locus=Lus10036938.g ID=Lus10036938.BGIv1.0 annot-version=v1.0 ATGTCCGGCGGCATAGACGGCGAACACGAGCCCTTTACCGGCGAGCAGGATGAAGCCGGCGAAGGCGAATCAATCCAAGGAGCTGATGCAAATCTTGAAA CTCCGACCGATCAGGGAGAAGATTTGTTTCGGACTCCGGTTGTGGAGAGCAGGGATGACATGTTCGTCGATGCAACTGGTGACGACGATGTTCACGACGG TCAGTTCCAGTTGCCGGAGAATGGAAATGGTTCGAAGGATGAGTCGGAGAATGGGTGGAAGGAGGAAAGGGAGGGATTTGTTAGGGAAGTTGCTGGTCTG CGAAAGGAGCTGAGAGGTTTTGTCGATGGACGGTTAGTGGATGACGATCAAAGTGAGGAGTCGTTGCGGGAGATGGTTAATGAGTGCTCGAATTCGGTTA AATTTGCTTTAGAGCAGAGGCTAGAGGACGAGACGAGGATGGATGAACTTCATAAAGACATTGAAGAGTTGAATGTGAAGGTTCAAGGGGATCAGAATGT GGAGGTTGTCGTGGATAGGTTGATGTCATTGCTTGGTACGGTGGCTAATCCAGTAGACATGATGGATGATTCTGTTCTTGGGAAAATTGGTTATGTTGAA AGAAGTGCTGTGATGTTGATGGAACAAAATAAAGCGATTCTGCATGAGATCCATCAGTTTAGAAAATCTATATACGAAGGAGGTTCAAATGTGGGTGAAG TAGACGGGGATGGCGAGTGGAGGCCGTTTCTAGCAACTGTTAAAGCCGAGATTCTGGACCTGAAGATGAAAGAGGTGGTTATGGTGGAGAAAATGGCCCA TTTAGTGGATCAAAACAGGCGATTGGTACTGGAGTCGGAAAAGGCAGCTTCTTCAGAGCTGGAAAGGGTGAAAGAAGAACTTGAGCGTGAAAAGGATAGG AGTGCTAAAACCAAAGAAAAGCTTAGTATGGCCGTGACAAAGGGGAAGGCACTGGTTCAACAGCGTGATTCGTTGAAGCAATCTCTGGCCGAGAAGGCTA GCGAGCTTGAAAAATGTTTGACGGAGTTGCAAGAGAAAACAAGTGCAGTTGAAGCAGCTGAGCATTGTAAGGAGGAACTAGTTAAGCGTGAAAATTTGGT GTCATCATCGCAGAACTCTCTCTCTCAGAGGAATGCAATACTTGAAAGCATTGAAGCGATAGTGGCACAGACTTCTATATCTGAAGATCTTCAACCAACA GATCTTGAAGGGAAGGTGAGGAGGATTGTAGATCAGGTGGGTTCATTGCAGGAAAGTATATCACAGCAGACAGTTGTGGTTAATAATATTGAAGAAATTC TTTGTCAGACAACTGTCCCCGAGGAACTAAAATCGGCAGATATTATTGTGAGACTGAAGTGGCTTTTAGATTTAGCTATATCACTAAAGGATACAATAGC TCAAATAAGTTTACCTGAGGAGGTTCAGTCAGAGGATATGGTTGGAAAATTGAAATGGCTTGCCGAGGACAGGAGTAAAATTTCCAGTGATTTGCTTGAA TTCCAGAAATTGAAAGATGCCTTAAGTCTTATTGATATGCCAGAAGCTGTCTCTTCCTCCGATTTGGTTGCTCAAATAGGTTGGCTTAAGGGATCAGTTG ACCAGGCAAGAGATGCAATAAACATGCTGGATGATGAAACTGCGAAAGCGAAGGAATCTGCCAGAAATAATCTGGACCAGTTGACTGCTTCAATTGCAGT CGAAATCCAAGAAAAGGAGCTTCTGAAGGCTGAACTAAATGAACTAATGGGTAAGCATGAAGAGATGGTGGAAAAGGAACGTCAAGCTTTGTCAGATAGA GATCAGATAATGAAGATGCTGGTAGAAGTTACTGGAGTCGAAACAGACGGTTTAGAAGGGTCCTATCCTAGTTACTCTGATGTAAGCATGCTAGTCGGGA GATGCTTAGAAAAGATAAAAGAAAAGAACAATGCTTCAGTTTCTGTTTCTCCTGCTGATGCTGAGGTCTATCATAATATGCAAAGCCATTTATATGTCAA GGATCAAGAATTGACGCTCTGTAAGACACTTCTTGAGGAGGATGAGTTGGTGAGATTACATGTGCATAATCTATCAGATTCCCTTAGAACAACATCTCAG GAGCTTGAAACATTGAGTTCGGAAAAAGAATCTATAAAGAATGATCTCAACAGATCAGAAGAAAAATGTGCCTTACTAAGGGAGAAGCTTTCCTTGGCAG TTAAGAAAGGCAAGGGGTTGGTGCAGGATAGAGAAAATTTGAAACTTCTTATGGATGAAAAGAAGTCTGAAATTAAAAAGTTGAATCTTGAGGTACAGCA GCAGGAATCTGTGGTTGGTGAGTGCAGGGATCAGATAAACCGGTTATCTACTGATTTGGAGCGAGCCCAGAATCTGGAAGCTGATCTTGCTGCTGCAAAA GATCAAAGAGATCAGTTCCAGCAGTTATTATCGGAGAGCAATAATATGCTGCATAAAGTAATGGAGTCTTTTGACCACATTACTCTTCCTATTGGTTCCA ATTTGGATGAACCTGTAGGGAAGATGAAGTCATTTGCAGACTACCTCAGCGAGTGCCAAGTGGCTAAGACTCATCTAGAGCAAGAACTAGACAAAATTAA GGAAGAACATACTGTTTTGACTAGTAAGTTGGCAGAATCCCAGCAAAATCTAAAATCTGGAGAAGATGCATTGTCTGATGCAGAGAATCAGATTTCGGAG CTAGCAGATGAAAAGAGAGCACTAGAGGCTGCAAAGGAGAATGTAGAACTAGACTTGCAAAAGGCTTTAGATGAAGTGAATGCACGAACTAGCAAGGTCA CTGAGGCTAATGCAGCTAGAAGCTCACTTGAAGATGCATTGTCGTTGGCAGAGAATAACATTGTGGTCCTTGTTAAAGAAAGAGAAGAAGCTCTAATTAG CAAGGCTGCTGTTGAAGCCGATTTAGAAACTGTAAGAGAGGAAGTAGATATTCAGTCTGAAAAATTGACGGATGCATACAGATCTATGAAGTCTCTGGAA GACACACTCTCTGAGGCGGAAACCAAGGTAGCTTCACTGACTGAAGAAAATAATGATTTCCAGGCTGTCAGAACCCAATTGGAGAATGAGCTAAAGAAAC TGAAATATGAAGCTGAGTCCCATGTACGTAAGCTTGAAGATACCACTTCAACCATTAAATCATTGGAAGATGCTTTGTCAAAGGCTATGAATGACAATTC TGCACTTGAAGATGACACAATCAGACAACATTTTGAGAAGCAATATCAAAATCTCAACAGTATGGATCTCATACTCAACGACTGTTTTGCTAATGGAGAT TCACAGATGCTGCAAATTTCTCCTATCATGGATGAATCACATGCAAGAAAAGCTTTCCCACATGACACTGGTAGTACTATAAGTGCTGAAATGGAAACTG GTGACGTTGTTTCAGCTGATTTGGACAATGTTTCGTTGTACTTTAAAAAGTTTAGTGATGGCTTACAGCTGAGGAACAAGATCCTGACTGAGAATTTTGA AGGACTTTCGAGCTTCACAGATGAATTTGCTGAAGTTCTGCACAGCAAATTAAGGGTAATAAAGGATGCTATAATTCTTGCCCGTGAGCGGATGGAGTCG ATGAAGCAGAAGATGATAGACATGGAAACTAGTAAAGAAGAACAAGATAGAGCCTTTGCCTTGTTAGAAAAAGAGCATAAAGTTCTCCTCTCTGCATGTG TCAACGCTACAAGTGAACTGCAGTTTGAATCTGTAAACGGTCTGATGGACCTGAAGTCTGTTCCTGAGCTTGAGAAGTTGAACCAGCTGTTTCAGTTGGA CAATAATAATACAGAAAATCGGACAATGGAGGAGGACAGTGAAGACATCAAGATGGTAGAAAAGTTGTTATCAGCTACGAGAAAGGTTCGGAACCAGATT AGATTGTTTGAACGTACGAGTGAAGTGGCAGCTGCTGTGATAGAGGATCTGCAGAACAAAATGGAGACCAGTGCAGGAACTTCTGAAAACGTCCTAAGAG AAAGGGATATACTTCAAAGTAAGGCTGTGGAGTTGGAGATGGAAGTAGGAGCACTGCAAAACTCGTGCCAGCAGCTGAGGGCCGAACTCGAAGACCATGA AAGCATCCAAAGCGAAAGGGACCTACTTCAGAGTAGGATTGCAGAGCTGGAGGCTGATGTAGAAGCATCTCAAAATTCATGCCTGCAGTTACGAGCTGAG CTAGAGGACTACAATGACTCGGAGAAGAAATTGCACCAAAAAGAAGTAGAGCTTTCAACGTTACAAAGCAATTTGTTGATGAAAGAACAAGAAGCCACAG ACGCTCTTATGTCAACATCAGAACTGAGAACTCTCTTTGACAAAATCCGTAGAATCAAAATGTTTAATTCAGGGTCAGAATTAGAATCAGTTGGATCACA TACTTCATCTGATGTGAATAAACTATTTTACGTAGTTGATAGTGTGGTACAATTACAGAATCAAATAAATGCATTAGCTTCGGAGAAAGATCAGCTACAG TCAGCGTTATCCAAGCAGATTCTTGAAATTGAGCTTTTGAAGGACGATGTTCAAAGTCATTCCAGAAACCAACAGTATGTAGAAACGATGAAGGATGAAA TTTCTGAGATAACCGTTGGCTTGGAGAAAATACTTGATGTTTTCGGAGGTGATGAAGTTGTTTCGGATAAAAAACCTGGCAGTGCAAGTAGGCTTTTGCA GCTGTTGGAAAAGCAGGTGAAGGCATTGTTCTTAGACGCTGAGAATGCCAAGTCCCACGCTCAGGAGCTTGGTAACAGGTTGCTTGAGAGCCAGAAGGTG GTGGATGGATTGTCAACTAGGGTCAAAGTGCTTGAAGATTCTGATCGAAGTAGAAGTACAGCACAACCTGAGATTTTCCAGGAAATGAGTATGTTTGAAG CTCCATCTCCACCAAGTGGCTTGGAGATATCCGAAGCTGAAGATGCTGGCTCCATCGGGAAGAACCCTCCGGCTCCAGTCCCGAAAGCTGCTCACGTAAG AACGATACGAAAGGGAGGATCGAGTGACCATCTCGCAATCAGCATCGACTCAGAATCCTCCACTCTCATCAACAAGGAAGAAACTGACGAGGAAAAAGGT CATGCATTCAAGTCTCTCAACACATCTGGTCTCATCCCCAGGCAAGGGAAGTCGGTCGCAGACCGAGTTGACGGAATATGGGTATCTGGTGGTAGGAATC TAATGAGTCGTCCAAGAGCAAGACTTGGCTTGATTGCCTATTGGCTTCTCTTGCACATGTGGCTATTAGCCACCATTTTTTTGCTCTCTGCAAGTCATGT TTTAGGGCTTCCTGCAGAGGAATTAGCAAAGAAGGTGGAAAAGAACAGACACAGTGAGCGAAGAACAAAGGAAGGAAAAGGTCGAGTCTTTTCTTCACCA AGTAATGAGAAATTATCATCTCCAACCAATATCGGTGGCGAAACGCCGAAGCAGCCAACCCTGAAACAAGTTATGCCTTTGACGATCGGGTTAAGCTATT GCAGCACCACCGCTGCTCTCCTACTAGCATGGCGGCGAAGCTTCAACCAGTCAAGTGGAATTCCGAAGTTTCGAACAAATGCGTCTGGTAAACGGAAGGT GTTCAAGAAGAAACAACGGATAGATGAACAAGAGCAATCACAAGCCGCCGTAGTTTCTTCTGATAAGGGATTTGGATACGACACTCAGCCTCCGGAGGCA AATGGGTCTGATTCTGAGCTGCAGAAGGTCAGCGATGGTGAGATTGCTGTTCCTTCTAAGGGAGCTGTAATTCAGGCTTGCACTCTCACTTCTGGGTTCA TTGCTGGCTTCGGGATATTACTTCGACAGGTTTCTCATGTTGCTGCGGAGGAAGGATTGCCGATCCTTGACTGCTCAGAACAAGTCTCTTTTGGTTTACA GATTTGGCACCTTGGCTTGATTCTTGGTTTGGTTTTGCTTATATCATCGTCTCGGTACTTGCTGCTGAAGACATGGCCGGATTTTGCTGAGTCGTCCGAA GCAGCGAACCGGCAGGTTCTATCATCACTTGAGCCACTAGATTACTTACTGGTTGCATTTCTTCCTGGAGTTAGCGAGGAGCTTCTTTTCCGCGGAGCCT TGCAGCCGTTCTTTGGAATGGACTGGAAGAGTGTTCTTGTCGTTGCTGCCATTTTCGGGGTTCTGCACCTTGGAAATGGCCGAAAGTACTCCTTCGCTGT CTGGGCGACCTTTGTTGGTTGCATCTATGGTTACTCCGCAATTGTATCCTCGAGCATCATCGTGCCAATGGCTTCCCACGCATTAAACAACCTGGTTGGA GGGGTCTTGTGGCGCAACACCCAATTCTCAAAGCTCTCAAAGTCAAAGTAG
AA sequence Show only first row Show all	>Lus10036938 pacid=23171335 polypeptide=Lus10036938 locus=Lus10036938.g ID=Lus10036938.BGIv1.0 annot-version=v1.0 MSGGIDGEHEPFTGEQDEAGEGESIQGADANLETPTDQGEDLFRTPVVESRDDMFVDATGDDDVHDGQFQLPENGNGSKDESENGWKEEREGFVREVAGL RKELRGFVDGRLVDDDQSEESLREMVNECSNSVKFALEQRLEDETRMDELHKDIEELNVKVQGDQNVEVVVDRLMSLLGTVANPVDMMDDSVLGKIGYVE RSAVMLMEQNKAILHEIHQFRKSIYEGGSNVGEVDGDGEWRPFLATVKAEILDLKMKEVVMVEKMAHLVDQNRRLVLESEKAASSELERVKEELEREKDR SAKTKEKLSMAVTKGKALVQQRDSLKQSLAEKASELEKCLTELQEKTSAVEAAEHCKEELVKRENLVSSSQNSLSQRNAILESIEAIVAQTSISEDLQPT DLEGKVRRIVDQVGSLQESISQQTVVVNNIEEILCQTTVPEELKSADIIVRLKWLLDLAISLKDTIAQISLPEEVQSEDMVGKLKWLAEDRSKISSDLLE FQKLKDALSLIDMPEAVSSSDLVAQIGWLKGSVDQARDAINMLDDETAKAKESARNNLDQLTASIAVEIQEKELLKAELNELMGKHEEMVEKERQALSDR DQIMKMLVEVTGVETDGLEGSYPSYSDVSMLVGRCLEKIKEKNNASVSVSPADAEVYHNMQSHLYVKDQELTLCKTLLEEDELVRLHVHNLSDSLRTTSQ ELETLSSEKESIKNDLNRSEEKCALLREKLSLAVKKGKGLVQDRENLKLLMDEKKSEIKKLNLEVQQQESVVGECRDQINRLSTDLERAQNLEADLAAAK DQRDQFQQLLSESNNMLHKVMESFDHITLPIGSNLDEPVGKMKSFADYLSECQVAKTHLEQELDKIKEEHTVLTSKLAESQQNLKSGEDALSDAENQISE LADEKRALEAAKENVELDLQKALDEVNARTSKVTEANAARSSLEDALSLAENNIVVLVKEREEALISKAAVEADLETVREEVDIQSEKLTDAYRSMKSLE DTLSEAETKVASLTEENNDFQAVRTQLENELKKLKYEAESHVRKLEDTTSTIKSLEDALSKAMNDNSALEDDTIRQHFEKQYQNLNSMDLILNDCFANGD SQMLQISPIMDESHARKAFPHDTGSTISAEMETGDVVSADLDNVSLYFKKFSDGLQLRNKILTENFEGLSSFTDEFAEVLHSKLRVIKDAIILARERMES MKQKMIDMETSKEEQDRAFALLEKEHKVLLSACVNATSELQFESVNGLMDLKSVPELEKLNQLFQLDNNNTENRTMEEDSEDIKMVEKLLSATRKVRNQI RLFERTSEVAAAVIEDLQNKMETSAGTSENVLRERDILQSKAVELEMEVGALQNSCQQLRAELEDHESIQSERDLLQSRIAELEADVEASQNSCLQLRAE LEDYNDSEKKLHQKEVELSTLQSNLLMKEQEATDALMSTSELRTLFDKIRRIKMFNSGSELESVGSHTSSDVNKLFYVVDSVVQLQNQINALASEKDQLQ SALSKQILEIELLKDDVQSHSRNQQYVETMKDEISEITVGLEKILDVFGGDEVVSDKKPGSASRLLQLLEKQVKALFLDAENAKSHAQELGNRLLESQKV VDGLSTRVKVLEDSDRSRSTAQPEIFQEMSMFEAPSPPSGLEISEAEDAGSIGKNPPAPVPKAAHVRTIRKGGSSDHLAISIDSESSTLINKEETDEEKG HAFKSLNTSGLIPRQGKSVADRVDGIWVSGGRNLMSRPRARLGLIAYWLLLHMWLLATIFLLSASHVLGLPAEELAKKVEKNRHSERRTKEGKGRVFSSP SNEKLSSPTNIGGETPKQPTLKQVMPLTIGLSYCSTTAALLLAWRRSFNQSSGIPKFRTNASGKRKVFKKKQRIDEQEQSQAAVVSSDKGFGYDTQPPEA NGSDSELQKVSDGEIAVPSKGAVIQACTLTSGFIAGFGILLRQVSHVAAEEGLPILDCSEQVSFGLQIWHLGLILGLVLLISSSRYLLLKTWPDFAESSE AANRQVLSSLEPLDYLLVAFLPGVSEELLFRGALQPFFGMDWKSVLVVAAIFGVLHLGNGRKYSFAVWATFVGCIYGYSAIVSSSIIVPMASHALNNLVG GVLWRNTQFSKLSKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10036938 [exp]	0	1
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	3.3	0.8640
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	6.9	0.8150
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	9.1	0.8399
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	18.7	0.7819
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	19.8	0.8301
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	24.0	0.7813
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	24.2	0.8251
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	29.5	0.8199
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	31.4	0.8201
AT5G58510			unknown protein		Lus10031287 [exp]	32.4	0.8062

Compare expression of checked genes

Lus10036938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.