Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24480 333 / 3e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 310 / 3e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G16030 110 / 4e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 113 / 1e-28 methyltransferases (.1) AT4G26730 88 / 4e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G53400 75 / 3e-15 unknown protein AT5G03190 54 / 3e-08 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT1G20330 42 / 0.0003 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006247 [exp] 450 / 3e-162 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 304 / 1e-104 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 213 / 1e-66 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10039718 [exp] 116 / 2e-31 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018506 [exp] 114 / 2e-30 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014232 [exp] 108 / 7e-27 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10012217 [exp] 108 / 9e-27 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10001267 [exp] 105 / 8e-26 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10022682 [exp] 87 / 4e-19 AT5G01710 698 / 0.0 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052100 [exp] 323 / 2e-112 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 317 / 5e-110 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G152100 [exp] 115 / 6e-31 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G125300 [exp] 100 / 3e-25 AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G128100 [exp] 94 / 9e-22 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 94 / 2e-21 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 83 / 7e-18 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G128800 [exp] 72 / 3e-14 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 67 / 2e-12 AT3G53400 420 / 6e-144 unknown protein Potri.011G128300 [exp] 42 / 0.0002 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10036941 pacid=23171136 polypeptide=Lus10036941 locus=Lus10036941.g ID=Lus10036941.BGIv1.0 annot-version=v1.0 ATGACGATGAAGCAAAACCCGCCACCGCCGATCCTCAAATACTTCCTCCTCACCTTATTCCTCTCCCTTCCTCTCCTCCTCTTCCTCTTCCCCCTCAACC ACCGCCCCCACCAACAACCCCAACCGTCAACTCCCGGTATCCGGATCCGACCCGGCTACACCACCTACGAATCCTACATCAACCGCCAGCTCAACAAGAC CCTCAACCCGAAACTCCGCCGGGTATGGAAGACCCGCGACTGGGACCGCAAAATCAACGTCTTCTCCAAGTTCTTCGCCCGCCTCAAATCTGAAAACCTC CTCTCCAACAACTCCAAGGCCCTCTGCGTCGGGGCTCGGGTCGGGCAGGAGGTGGAGGCCCTGAAGCGGGTCGGAGTGTCCGACTCGATCGGGATCGACC TCGTCCCATCTCCGCCGTTGGTCGTCAAGGGCGACTTTCATTCGCAGCCGTTTGATGATGAGACGTTTGACTTTGAATTCTCCAACGTGTTCGATCACGC GCTTTATCCGGAGAAGTTCGTCGGGGAGATCGAGCGGACGCTGAAGCCAGGTGGGGTATGTGTTCTGCACGTGGCGGTGTCGCGGCGGTCGGATAAGTAC TCGGCGAATGATGTGCTGAGATTGGAGGCGGTAGTGGAGATGTTTAAGGAGTCGGAGGTTGTTTATCGGCGGAAAGTTGACGGGTTCGGATTGGATACGG AGATTGTGTTTAGAAAGAAGAAGGTGACGCCGGCGGCGGTGGGTGAATTAACGGACGTTAAAGCGTCACGATTACGATGA
AA sequence Show only first row Show all	>Lus10036941 pacid=23171136 polypeptide=Lus10036941 locus=Lus10036941.g ID=Lus10036941.BGIv1.0 annot-version=v1.0 MTMKQNPPPPILKYFLLTLFLSLPLLLFLFPLNHRPHQQPQPSTPGIRIRPGYTTYESYINRQLNKTLNPKLRRVWKTRDWDRKINVFSKFFARLKSENL LSNNSKALCVGARVGQEVEALKRVGVSDSIGIDLVPSPPLVVKGDFHSQPFDDETFDFEFSNVFDHALYPEKFVGEIERTLKPGGVCVLHVAVSRRSDKY SANDVLRLEAVVEMFKESEVVYRRKVDGFGLDTEIVFRKKKVTPAAVGELTDVKASRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10036941 [exp]	0	1
AT5G43870			Plant protein of unknown funct...		Lus10021903 [exp]	8.5	0.8457
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	9.4	0.8654
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10040245 [exp]	12.5	0.8559
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	14.3	0.8633
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	17.0	0.8567
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	19.3	0.8567
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	21.8	0.8560
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	23.7	0.8488
AT4G05160			AMP-dependent synthetase and l...		Lus10021431 [exp]	23.7	0.7775
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	23.8	0.8538

Compare expression of checked genes

Lus10036941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.