Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26100 507 / 3e-179 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G15430 124 / 6e-31 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 97 / 8e-22 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 92 / 3e-20 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 89 / 5e-19 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT1G65920 88 / 3e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 83 / 9e-17 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 82 / 2e-16 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G12350 80 / 8e-16 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 80 / 1e-15 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006242 [exp] 713 / 0 AT3G26100 796 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10011399 [exp] 547 / 0 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006455 [exp] 538 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10033543 [exp] 95 / 4e-21 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10029536 [exp] 94 / 1e-20 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10039618 [exp] 94 / 2e-20 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10017581 [exp] 90 / 2e-19 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10037192 [exp] 82 / 3e-16 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10030999 [exp] 80 / 1e-15 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018600 [exp] 585 / 0 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.015G009400 [exp] 542 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G402800 [exp] 121 / 6e-30 AT3G15430 723 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.011G121900 [exp] 114 / 2e-27 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.007G100200 [exp] 103 / 6e-24 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 101 / 2e-23 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 95 / 3e-21 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.008G167500 [exp] 85 / 2e-17 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 84 / 5e-17 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 80 / 9e-16 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10036945 pacid=23171037 polypeptide=Lus10036945 locus=Lus10036945.g ID=Lus10036945.BGIv1.0 annot-version=v1.0 ATGGACGCCACAACAAGTGGGACGCCGACAGTTCAATATATGAACGTATCAGAACAACAACAACCCATCACTACTGCAATCGTTGTGTCAACTGCTTCCA CATTCCAAAGAAACTTACGCCATTGTTATGGTGGAGGAACAACTCCTGGAGAGTTCCCCTTAGCAGCTAGCCCTTCCATTGTTCTTCATGTCCTCACCGC TTGTAATTTGGACCCTCAAGACCTTGCCAAACTGGAGGCAACTCCGGACAACTCGGGCATGGAAGGTATAAGGATCATTCAAGCAACTGCTGGACCGGGG AGGACAATGCTGATCAGTGATGCTGGCCGAGTTTACACGTTCGGGAAGGACTCGTATGGAGATGCTGAGTATGGAGTCCAGGGGTCTAAAATGATCACAA CTCCACAAGTGATTGAGTCTTTGAAGGACATATTTGTTGTGCAAGCTACAATTGGGAACTTCTTCACTGCTGTATTGTCTAGGGAAGGTAGGGTTTACAC ATTCGCTTGGGGGAATGATGCCAAACTCGGTCACCAAACCGATCTGAATGATGTGGAGCCTCACCCTTTGCTTGGTGCACTTGAGAACATTCCTGTGGTA CAAATTGCAGCTGGATATTGCTACCTTCTTGCTCTTGCCTGTCAACCTACCGGCATGTCTGTTTATTCGGTTGGATGTGGATTAGGCGGGAAGCTGGGAC ACGGATCGAGAACCGATGAGAAGCACCCTCGACTAATCGAGCAATTACAGGTACTGAACCTCCAACCCACGGTAGTTTCAGCCGGTGCTTGGCACTCGGC TGTAGTGGGACGAGATGGAAGAGTATGCACGTGGGGGTGGGGGCGTTACGGCTGCTTAGGACATGGGAACGATGAATGCCAGTCGGTTCCTAAAGTCGTG GGGGCTCTCAGCAATGTGAAAGCAGTTCATGTAGCTACAGGTGACTACACCACGTTTGTGGTCTCGGAAGAAGGAGATGTGTATTCTTTTGGCTGTGGCG ATTCTTCTAGCCTCGGACGCAATGCCATTGTCGATGAACAGCAGGCCGATAATGCACATGTGTTAAGCCCTGAGCTGGTGACATCCCTAAAGGAAGTGAA TGAGAGAGTGGTTCACATCAGCTTGACCAACTCGATCCAGTGGAACGCTCACACATTCGCGCTGACGGAATCGGGAAAACTGTACGGGTTCGGGGCAGGA GACAAAGGGCAGCTTGGAGTAGAACTTGCGAACAACCAGACAGAAAGGGGGATCCCAGAAAGGGTGGATATTGATCTGAGTTAG
AA sequence Show only first row Show all	>Lus10036945 pacid=23171037 polypeptide=Lus10036945 locus=Lus10036945.g ID=Lus10036945.BGIv1.0 annot-version=v1.0 MDATTSGTPTVQYMNVSEQQQPITTAIVVSTASTFQRNLRHCYGGGTTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATPDNSGMEGIRIIQATAGPG RTMLISDAGRVYTFGKDSYGDAEYGVQGSKMITTPQVIESLKDIFVVQATIGNFFTAVLSREGRVYTFAWGNDAKLGHQTDLNDVEPHPLLGALENIPVV QIAAGYCYLLALACQPTGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQLQVLNLQPTVVSAGAWHSAVVGRDGRVCTWGWGRYGCLGHGNDECQSVPKVV GALSNVKAVHVATGDYTTFVVSEEGDVYSFGCGDSSSLGRNAIVDEQQADNAHVLSPELVTSLKEVNERVVHISLTNSIQWNAHTFALTESGKLYGFGAG DKGQLGVELANNQTERGIPERVDIDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	0	1
AT1G44770			unknown protein		Lus10034500 [exp]	2.8	0.9707
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	3.3	0.9741
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	3.7	0.9739
					Lus10015413 [exp]	3.9	0.9713
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	5.9	0.9675
AT5G65030			unknown protein		Lus10026049 [exp]	6.9	0.9649
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	9.2	0.9685
AT3G19990			unknown protein		Lus10010154 [exp]	10.3	0.9397
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	11.0	0.9552
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	11.8	0.9691

Compare expression of checked genes

Lus10036945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.