Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63180 587 / 0 Pectin lyase-like superfamily protein (.1) AT1G67750 583 / 0 Pectate lyase family protein (.1) AT4G24780 566 / 0 Pectin lyase-like superfamily protein (.1.2) AT4G13710 544 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G24670 543 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 536 / 0 Pectin lyase-like superfamily protein (.1) AT3G27400 535 / 0 Pectin lyase-like superfamily protein (.1) AT1G04680 527 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 513 / 0 Pectin lyase-like superfamily protein (.1) AT4G13210 506 / 5e-179 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006456 [exp] 622 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 620 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10033037 [exp] 563 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 539 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 538 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 534 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 533 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 528 / 0 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 528 / 0 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087800 [exp] 606 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 598 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 587 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 583 / 0 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 565 / 0 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 536 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 534 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 530 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 520 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 450 / 2e-156 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10036946 pacid=23171163 polypeptide=Lus10036946 locus=Lus10036946.g ID=Lus10036946.BGIv1.0 annot-version=v1.0 ATGGCAACCAAACCATCCCTTCTTCTTCTTCTTCTTCTTCTTCATTTCTCATCCTACATTTCCTCTTCCCCTGTTCCTGACCCTGAGCTTGTTGCTGAAG AAGTCCACAGGAGCATAAGAAATGCGACAGAATCAAGCAGGAGGAGCTTAGCCTACCTATCATGCCAGACGGGCAACCCGATCGACGACTGCTGGAGATG CGACCAGAACTGGCACAAGAACCGAAAGCGGCTCGCCGACTGTGCGATCGGGTTCGGCAAGAACGCGATCGGAGGCCGCGATGGCCGGTTCTACATAGTC ACCGATTCCGGCGACGACGCAGTAAACCCCAAACCCGGAACGCTACGCTACGCCGCGATCCAGGACAGGCCGCTCTGGATCGTGTTCGCAAGGGACATGG TGATCAAGCTCAAAGCTGAGCTGATGATGAACTCCTTCAAGACCATCGACGGCAGGGGCTACTCCGTCCACATCGCCGGCGGCCCTTGCATCACGATCCA GTACGTGACGAATGTGATCATCCACGGGATCAACGTCCACGACTGCAAGCAAGGCGGGAACACCTATGTGAGGGATTCCCCGACACATTACGGGTACCGG ACCATTTCGGATGGGGACGGGATCTCGATATTCGGAGGGAGTCACGTATGGATCGACCATGTATCGCTGTCGAACTGTAATGACGGGTTGATCGACGTGA TTCATGGGTCGACCGCGATCACTATTTCAAACTGTTACATGACGCATCATAACAAGGTTATGTTGTTGGGTCATAATGACGATTTCACTAGGGATAAGAT CATGCAGGTTACCATCGCGTTTAACCATTTCGGGGAAGGGCTTGTTCAGAGGATGCCTAGGTGCAGGCATGGCTATTTCCATGTGGTGAACAATGACTAT ACTCACTGGCAAATGTATGCAATTGGTGGGAGTGCTGCTCCAACGATTAATAGTCAAGGGAACCGGTTTCTGGCTCCGGATCTGAGGTTTAACAAGGAGG TGACGAAGCATGAGATAGCACCGGAGAGCGAATGGAGGAAGTGGAACTGGAGGTCGCAAGGGGATTTGTTTCAGAACGGGGCGTTCTTCACCATGACTGG TGCGGGAGCTTCTTCGAGCTACGCGAGGGCGTCGAGTTTGGGAGCGAAGCCGTCTTCGATCGTTGGTTCGATCACGGCCGGAGCTGGATCATTGCCTTGC AAGAGGGGTAGAAGATGCTGA
AA sequence Show only first row Show all	>Lus10036946 pacid=23171163 polypeptide=Lus10036946 locus=Lus10036946.g ID=Lus10036946.BGIv1.0 annot-version=v1.0 MATKPSLLLLLLLLHFSSYISSSPVPDPELVAEEVHRSIRNATESSRRSLAYLSCQTGNPIDDCWRCDQNWHKNRKRLADCAIGFGKNAIGGRDGRFYIV TDSGDDAVNPKPGTLRYAAIQDRPLWIVFARDMVIKLKAELMMNSFKTIDGRGYSVHIAGGPCITIQYVTNVIIHGINVHDCKQGGNTYVRDSPTHYGYR TISDGDGISIFGGSHVWIDHVSLSNCNDGLIDVIHGSTAITISNCYMTHHNKVMLLGHNDDFTRDKIMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY THWQMYAIGGSAAPTINSQGNRFLAPDLRFNKEVTKHEIAPESEWRKWNWRSQGDLFQNGAFFTMTGAGASSSYARASSLGAKPSSIVGSITAGAGSLPC KRGRRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63180			Pectin lyase-like superfamily ...		Lus10036946 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	1.7	0.9701
AT5G51490			Plant invertase/pectin methyle...		Lus10038919 [exp]	3.5	0.9712
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	4.4	0.9722
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	8.4	0.9597
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	9.2	0.9503
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	9.4	0.9689
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	10.7	0.9610
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	11.0	0.9630
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	11.4	0.9344
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	15.9	0.9338

Compare expression of checked genes

Lus10036946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.