Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24510 1005 / 0 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 311 / 1e-99 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 272 / 3e-84 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 265 / 1e-81 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 256 / 2e-78 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 243 / 2e-73 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G16070 207 / 7e-60 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 203 / 2e-58 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 187 / 3e-52 TCP-1/cpn60 chaperonin family protein (.1) AT1G67760 99 / 1e-24 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011401 [exp] 1058 / 0 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 1057 / 0 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006240 [exp] 872 / 0 AT1G24510 816 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10000113 [exp] 687 / 0 AT1G24510 648 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008670 [exp] 301 / 8e-96 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 275 / 8e-86 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 275 / 1e-85 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 274 / 2e-85 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 273 / 9e-85 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051700 [exp] 1018 / 0 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 1013 / 0 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 315 / 7e-101 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 310 / 2e-99 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 276 / 6e-86 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 275 / 2e-85 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 273 / 1e-84 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 270 / 8e-84 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 267 / 8e-83 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 262 / 2e-80 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10036947 pacid=23171309 polypeptide=Lus10036947 locus=Lus10036947.g ID=Lus10036947.BGIv1.0 annot-version=v1.0 ATGGCGTTAGCGTTCGATGAGTACGGGCGGCCGTTCATCATAATAAAGGAGCAGGAGCACAAGACTCGGCTGCGAGGTGTCGATGCTCACAAGGCCAATA TTTCCGCCGGTAAGGCCGTTTCTCGTATCCTCCGTACTTCGCTCGGTCCCAAGGGGATGGACAAGATGCTCTCTAGTCCCGACGGAGACGTCACTATCAC GAATGATGGTGCTACAATCTTGGAGCAGATGGACGTGGACAACCAAATTGCTAAGCTGATGGTTGAGCTATCTAGGAGTCAGGATTACGAAATTGGCGAT GGTACGACCGGAGTTGTGGTCATGGCTGGGAGCCTGCTGGAGCAGGCTGAGAAGTTGATAGAGCGGGGAATTCATCCAATTAGAATTGCAGAGGGCTACG AGATGGCATCTAGAATAGCGGTTGAACATATGGAGCGTATTGCTCACAAGTTTGAATTTGAAGAGAAGAACATTGAACCCCTGGTTCAAACATGCATGAC TACCTTATCTTCGAAGATTGTGAATCGATGCAAGCGTAGTCTGGCTGAAATTGCAGTCAAAGCTGTCCTTGCTGTTGCAGATCTAGAGAGGAAGGATGTT AATTTGGACTTGATAAAGGTTGATGGCAAGGTGGGTGGTAAGTTGGAAGATACCGAACTGATATACGGAATAGTCGTTGACAAGGACATGAGTCACCCAC AGATGCCTAAGCAAATTCAAGACGCAAACATAGCTATCCTGACATGCCCCTTTGAACCCCCGAAGCCAAAGACCAAGCATAAGGTGGACATTGACACAGT AGAGAAGTTTGAGACTCTGCGTAAGCAGGAGCAGCAGTATTTCGATGATATGGTTCAGAAGTGCAAGGATGTTGGTGCCACCCTGGTTATCTGCCAGTGG GGTTTTGACGACGAGGCAAACCATTTGTTAATGCACAGAAATCTGCCTGCTGTTCGTTGGGTTGGTGGAGTAGAGCTAGAGCTGATAGCGATTGCCACAG GTGGCAGAATCGTTCCAAGATTCCAAGAATTGACACCAGAGAAGCTAGGAAAGGCTGGCTTAGTCAGGGAAAAGGCCTTTGGTACCACGAAAGACCGAAT GCTCTACATTGAACATTGTGCGAATTCAAGAGCTGTCACCATATTTATCCGTGGAGGTAACAAAATGATGATCGAAGAGACGAAGCGAAGCATCCATGAC ACTTTATGTGTGGCCAGGAATCTCATCCGCAACAACTCTATTGTGTATGGTGGTGGCTCCGCTGAAATATCGTGCTCAATCGCTGTTGAAGCTGCTGCTG ATAGATACCCGGGAGTCGAGCAGTATGCCATCCGGGCTTTCGCCGATGCCTTGGATGCAGTTCCGACGGCACTTGCCGAGAACAGCGGACTCCAACCTAT CGAGACACTTTCCGCTGTGAAGTCTCAGCAAGTCAAGGTAACTCGATTAGCACCTCCTGAGAACAACCCTCATTGTGGAATCGACTGTAATGACGTTGGT ACAACTGACATGCGCGAGCAGGATGTGTTCGAGACGCTGATCGGCAAGCAACAGCAGATCTTGCTCGCTACCCAAGTCGTCAAGATGATACTGAAAATCG ACGACGTCATCTCTCCCTCCGAGTTCTGA
AA sequence Show only first row Show all	>Lus10036947 pacid=23171309 polypeptide=Lus10036947 locus=Lus10036947.g ID=Lus10036947.BGIv1.0 annot-version=v1.0 MALAFDEYGRPFIIIKEQEHKTRLRGVDAHKANISAGKAVSRILRTSLGPKGMDKMLSSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGD GTTGVVVMAGSLLEQAEKLIERGIHPIRIAEGYEMASRIAVEHMERIAHKFEFEEKNIEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDV NLDLIKVDGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIQDANIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDDMVQKCKDVGATLVICQW GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKAFGTTKDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHD TLCVARNLIRNNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFADALDAVPTALAENSGLQPIETLSAVKSQQVKVTRLAPPENNPHCGIDCNDVG TTDMREQDVFETLIGKQQQILLATQVVKMILKIDDVISPSEF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10036947 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	5.8	0.7688
AT4G11630			Ribosomal protein L19 family p...		Lus10041948 [exp]	9.2	0.7419
AT1G50920			Nucleolar GTP-binding protein ...		Lus10027370 [exp]	13.0	0.7502
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	24.5	0.7367
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	24.7	0.7251
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	26.3	0.7483
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	27.9	0.7436
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	28.1	0.7364
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	29.1	0.7101
AT4G32605			Mitochondrial glycoprotein fam...		Lus10034136 [exp]	31.9	0.6865

Compare expression of checked genes

Lus10036947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.