Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13180 700 / 0 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) AT2G42100 220 / 2e-68 Actin-like ATPase superfamily protein (.1) AT3G53750 220 / 3e-68 ACT3 actin 3 (.1) AT2G37620 220 / 3e-68 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G59370 219 / 5e-68 ACT4 actin 4 (.1.2) AT3G46520 219 / 7e-68 ACT12 actin-12 (.1) AT3G12110 218 / 2e-67 ACT11 actin-11 (.1) AT5G09810 216 / 8e-67 ACT2/7, ACT7 actin 7 (.1) AT1G49240 211 / 6e-65 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 211 / 6e-65 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006238 [exp] 769 / 0 AT1G13180 786 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Lus10001694 [exp] 217 / 6e-67 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 217 / 6e-67 AT3G12110 766 / 0.0 actin-11 (.1) Lus10016259 [exp] 216 / 7e-67 AT3G46520 767 / 0.0 actin-12 (.1) Lus10016558 [exp] 216 / 1e-66 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 216 / 1e-66 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 216 / 1e-66 AT3G12110 768 / 0.0 actin-11 (.1) Lus10029286 [exp] 216 / 1e-66 AT3G46520 768 / 0.0 actin-12 (.1) Lus10005819 [exp] 216 / 2e-66 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051500 [exp] 720 / 0 AT1G13180 811 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Potri.008G182700 [exp] 717 / 0 AT1G13180 771 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Potri.010G204300 [exp] 218 / 2e-67 AT3G12110 733 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 217 / 3e-67 AT5G09810 769 / 0.0 actin 7 (.1) Potri.016G045500 [exp] 216 / 8e-67 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 216 / 8e-67 AT3G12110 767 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 216 / 1e-66 AT3G12110 765 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 216 / 1e-66 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 216 / 1e-66 AT5G09810 775 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 214 / 5e-66 AT5G09810 731 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10036948 pacid=23171094 polypeptide=Lus10036948 locus=Lus10036948.g ID=Lus10036948.BGIv1.0 annot-version=v1.0 ATGGACCCCACCGCTCGCCCCGCCGTGGTCATCGACAACGGCACTGGGTACACTAAGATGGGATTCGCGGGAAACGTGGAGCCGTGTTTTACCTTGCCAA CAGTGGCTGCGGTGAACGAATCGTTTCTCAATCAATCTCGGGCTTCCTCGAAGGCGAATTGGCTGGCTCAGCATAGCGCAGGGGTTTTGGCCGATCTGGA CTTCTTCATTGGGGATGAAGCCATTACCAAATCGAGATCTAGCAGTACTTACAACCTTAGCTACCCGATTCAACATGGGCAAGTTGAGAATTGGGACGCC ATGGAGAGGTACTGGCAGCAGTCTATATTCAATTACTTACGATGTGATCCAGAGGATCATTACTTTCTTTTGACCGAGAGCCCGCTCACGGCACCGGAGA GTAGGGAGTATACTGGTGAGATCATGTTTGAGACCTTCAATGTCCCTGGCCTTTACATTGCCGTCAATTCGGTTCTTGCTCTTGCTGCCGGCTATACTGC ATCCAAGTGCGAGATGACAGGTGTAGTGGTGGATGTTGGAGATGGAGCAAGTCGTGTTGTCCCTGTTGCAGAGGGTTATGTTATTGGAAGCAGCATCAAA ACCATTCCAATTGCAGGGAAGGACGTTACACTTTTTGTGCAGCAGCTCATGCGGGAAAGAGGAGAGAATGTACCACCTGAAGATTCTTTTGAAGTGGCTC GGAAAGTGAAAGAAATGTATTGCTACACCTGTTCTGATATTGTCAAGATTTTCTTCAATCCTGAGACTTATAGCACTGACTTCACAACTCCTTTACCAGA AGTAATAGACAAATGCATACAGTCGGCTCCAATAGACACAAGGAGGGCTTTATACAAGAATATAGTATTATCTGGAGGGTCAACCATGTTCAAAGACTTT GGTAGAAGGTTGCAACGAGATATAAAGAAGATTGTGGATGCGCGAGTCCGAGCATCTGAAGCCATACTTGGCGGTGATATTAAAGCTCAACCAGTGGAAG TAAATGTTGTCAGTCATCCTATCCAGCGATACGCAGTTTGGTTTGGAGGTTCAGTACTTGCATCAACACCTGAGTTTTTCGCGGCTTGCCACACGAAAGC CGAATACGAAGAGCACGGGGCAAGCATATGCCGCACGAATCCTGCTTTCAAGGGAATGTATTAG
AA sequence Show only first row Show all	>Lus10036948 pacid=23171094 polypeptide=Lus10036948 locus=Lus10036948.g ID=Lus10036948.BGIv1.0 annot-version=v1.0 MDPTARPAVVIDNGTGYTKMGFAGNVEPCFTLPTVAAVNESFLNQSRASSKANWLAQHSAGVLADLDFFIGDEAITKSRSSSTYNLSYPIQHGQVENWDA MERYWQQSIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTASKCEMTGVVVDVGDGASRVVPVAEGYVIGSSIK TIPIAGKDVTLFVQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKIFFNPETYSTDFTTPLPEVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDF GRRLQRDIKKIVDARVRASEAILGGDIKAQPVEVNVVSHPIQRYAVWFGGSVLASTPEFFAACHTKAEYEEHGASICRTNPAFKGMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10036948 [exp]	0	1
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	6.6	0.9361
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	7.1	0.9386
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	7.2	0.9208
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	8.0	0.9297
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10008271 [exp]	9.7	0.9293
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10022242 [exp]	11.5	0.9349
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	13.3	0.9237
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10036578 [exp]	13.9	0.9136
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	15.3	0.9246
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	18.2	0.9226

Compare expression of checked genes

Lus10036948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.