Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13170 1222 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT4G08180 925 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 865 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT4G22540 773 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 750 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT2G31030 598 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT1G77730 216 / 2e-64 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 176 / 8e-48 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 167 / 2e-44 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 163 / 4e-43 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006237 [exp] 1538 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10028087 [exp] 912 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 887 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024613 [exp] 776 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10025695 [exp] 746 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10035967 [exp] 690 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10032251 [exp] 686 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10024386 [exp] 169 / 4e-45 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 166 / 4e-44 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051400 [exp] 1295 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.005G172900 [exp] 935 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 927 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.003G111600 [exp] 807 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.001G121700 [exp] 787 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.019G015111 [exp] 786 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.008G182766 [exp] 521 / 1e-180 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 167 / 2e-44 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 63 / 4e-10 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 58 / 1e-08 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10036949 pacid=23171000 polypeptide=Lus10036949 locus=Lus10036949.g ID=Lus10036949.BGIv1.0 annot-version=v1.0 ATGAATCCGCTCTGCTGCATTGCTCCGGTCTCCATCGATCGGGATCGCGCCAACCCGGTCGTCGCCGCCAAATCAGTCGCAGCTCCCGATTCCGTCAGCC ACAGCTCAAAGCCGAGCTTCTCGTCTGCTCACCAGGTCTATTCCGGAGCTGAGTTCGACAGGTTCGACAGGCTGTCGAGCTCTGCTGCGGTGGATCCCGA GGAACCGTCGATCGGAGATTCAACGAAGGCGAGCAATGCGGCGGCGGTGGCCGGGATTCTGTACAAGTGGGTGAACTACGGGAAAGGATGGAGGTCGAGG TGGTTCGTACTGGAAGATGGCGTGCTGTCGTACTACAAGATTCACGGTCCTGACAAGATTCTGATGAGTCCTGGTAAGGAGAAAGGTGTTAGGGTGATCG GCGGTGAGTCGATGAGGTTCGTCAGAAAGGAGAACTGGAGTAGTGGAGGGAGTGGTAGTCGGATTGCTGGCTCCAAGCAGTGGAAGCCTTTTGGTGAGAT TCATTTAAAGGTTTCTTCAATTCGAGCTAGCAAGTCAGATGACAAGAGGCTGACAATCTTCACAGGAACGAAGACGCTTCACTTACGCTGCATCACTAGA GACGACAGAGCTTTATGGCTCGAGGCATTGCAGACGGCAAAGGATCATTTTCCACGAGTGTTGTCAAGCACTGATTTCACCTCGGCTGATGATGTGATTG TGTCATCCGAGAAGTTGAGGTCTCGGTTAGTGCAAGAAGGCGTTGGTGAGGCGGTGATTAAAGATTGTGAGACTATTATGCTCTCGGAATTCTCTGAGCT GCAAAACCAGTTGAGGTGCCTTCAACGGAAGCATCTTATCTTGTTGGATACCTTAAGGCAGTTAGAGACAGAGAAAATAGAATTGGAAACTACTGTAGTG GATGAGACGAAGGAGCGGGACTCATATTGTGGACAAGCAAACAGAAGATTCAGTGATTTCTATTCTGTATTGTCAGAAGGCAGTGTTAGCGACTCTGACG CAGACAACGAAAGTCAAGATGGGGTTGACGCTGAAACTGATGAAGAAGACAAGACGTTCTTCGACACAAACGATTTCTTGTCAGCTGAAGCATTGCGGAG CGCTTCGTACAGGAGTAGGGAATCAGTGGGAAGTGCGTGTATATATGACAAAGACGCGTTTTACTCCGATCGTCTGCAGCATGAGAAAGACATCACGACA GCCAACTATCCGTTAGTTCGAAGGCGCGACAATTTGCCGGAACCAAAGGAGAAGGAGAAGCCTGTTGGTCTGTGGTCGATTATCAAGGACAATATCGGGA AGGACTTGTCTGGAGTCTGCCTTCCCGTGTACTTTAACGAACCACTCTCCTCGCTACAGAAGTGCTTCGAGGATTTGGAATACTCGTACCTGGTCGATCG AGCATTACAATGGGGGAAACAGGGGAATGACCTGATGCGAATTCTGCATATTGCGGCATTCGCTGTATCTGGATATGCATCGACTGAAGGCCGCCAGTGT AAGCCGTTCAACCCTCTACTGGGGGAGACGTACGAAGCTGATTATCCAGACAAAGGTCTACGTTTCTTTTCCGAAAAGGTTAGCCACCACCCGATGATCG TCGCGTGTCACTGTGAGGGAAAAGGCTGGACATTCTGGGGAGACTCGAATCTCAAGGGCAAGTTCTGGGGAAGATCTATCCAACTCGATCCCGTAGGCAT ACTTACATTGCAGTTTGAGGATGGCGAGACTTACCAATGGAGCAAAGTTACGACGTCCATATACAACATCATTCTAGGAAAACTGTACTGTGATCACTAC GGCACTATGCGGATCAAAAGCAGCGGCAACTACTCGTGCAGGCTCAAGTTCAAGGAGCAGTCCATTATCGACCGAAACCCCCATCAGGTTCATGGGTTCG TACAGGACGACAGAACTGGACAGAAGGTGGCAATGCTGGTGGGGAAGTGGGACGAAGCGATGTACTATGTTCTAGGCGATCCAACGACAAAGCCAAAGGG TTACGACCCAATGACAGAAGCAATCTTATTATGGGAGAGGGACAAGTCGGTTACCAAAACCAGATACAACCTCACACCCTTCGCCATAACCTTAAACGAG GTTACTCCCGGATTGTTGGAGAAGTTGCCACCCACAGACTCCAGACTTCGACCGGATCAAAGGTTCCTCGAAAACGGGGAGTATGAGTTGGCGAATGCGG AGAAGTTGAGACTCGAACAGCTACAAAGACAGGCGAGGAAGGTACAAGAAAGGGGATGGCAGCCACGTTGGTTCCGACGAGACCACGATTGTTGCTACAA GTACACGGGAGGCTACTGGGAAGCTAGGGAAAGAAAGGACTGGGATGGGATTCCGGACATCTTCGGGCAAACCATGGCTCGAGCAACCGATTCACCATCT CCTTCGGCTGAAGAAGACTTAGGATAG
AA sequence Show only first row Show all	>Lus10036949 pacid=23171000 polypeptide=Lus10036949 locus=Lus10036949.g ID=Lus10036949.BGIv1.0 annot-version=v1.0 MNPLCCIAPVSIDRDRANPVVAAKSVAAPDSVSHSSKPSFSSAHQVYSGAEFDRFDRLSSSAAVDPEEPSIGDSTKASNAAAVAGILYKWVNYGKGWRSR WFVLEDGVLSYYKIHGPDKILMSPGKEKGVRVIGGESMRFVRKENWSSGGSGSRIAGSKQWKPFGEIHLKVSSIRASKSDDKRLTIFTGTKTLHLRCITR DDRALWLEALQTAKDHFPRVLSSTDFTSADDVIVSSEKLRSRLVQEGVGEAVIKDCETIMLSEFSELQNQLRCLQRKHLILLDTLRQLETEKIELETTVV DETKERDSYCGQANRRFSDFYSVLSEGSVSDSDADNESQDGVDAETDEEDKTFFDTNDFLSAEALRSASYRSRESVGSACIYDKDAFYSDRLQHEKDITT ANYPLVRRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALQWGKQGNDLMRILHIAAFAVSGYASTEGRQC KPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGKGWTFWGDSNLKGKFWGRSIQLDPVGILTLQFEDGETYQWSKVTTSIYNIILGKLYCDHY GTMRIKSSGNYSCRLKFKEQSIIDRNPHQVHGFVQDDRTGQKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAILLWERDKSVTKTRYNLTPFAITLNE VTPGLLEKLPPTDSRLRPDQRFLENGEYELANAEKLRLEQLQRQARKVQERGWQPRWFRRDHDCCYKYTGGYWEARERKDWDGIPDIFGQTMARATDSPS PSAEEDLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10036949 [exp]	0	1
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	3.7	0.8695
AT5G09995			unknown protein		Lus10016816 [exp]	8.6	0.8626
AT2G45050	GATA	GATA2	GATA transcription factor 2 (....		Lus10028178 [exp]	16.1	0.7880
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10011507 [exp]	21.2	0.8274
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10039396 [exp]	22.3	0.8515
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	23.0	0.8597
AT1G50660			unknown protein		Lus10021521 [exp]	25.4	0.8578
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	25.8	0.8311
AT2G46000			unknown protein		Lus10018829 [exp]	35.7	0.8422
AT5G01660			unknown protein		Lus10012220 [exp]	37.3	0.8524

Compare expression of checked genes

Lus10036949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.