Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13160 541 / 0 ARM repeat superfamily protein (.1) AT4G31520 430 / 2e-140 SDA1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006236 [exp] 906 / 0 AT1G13160 822 / 0.0 ARM repeat superfamily protein (.1) Lus10028318 [exp] 822 / 0 AT4G31520 697 / 0.0 SDA1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182900 [exp] 747 / 0 AT4G31520 632 / 0.0 SDA1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05285 [flax] [poplar] SDA1 SDA1 PF08158 [flax] [poplar] NUC130_3NT NUC130/3NT domain
Representative CDS sequence Show only first row Show all	>Lus10036950 pacid=23171152 polypeptide=Lus10036950 locus=Lus10036950.g ID=Lus10036950.BGIv1.0 annot-version=v1.0 ATGAAGATCGACCCGGAAGGATACACGACGGAGCTGGCACTTATCTACAGCCAGTTCAACTGCGCCCTCGAGCTATTCCAGCAGCAGGCAGCTCTAAGCT TCGCCTCCGCCTCCGGTGTATGCGCCGACCCTACCATCGCCAAGGAGCTCGGCGACCGCACCATGTTCCTCTCTCACGTTGCGCCGTTTTACTCCAAGGA GCTCACCAAGTTCCCCGGACAGCTCGTCGATTTTCTGAAATCGTCGGCCAGGTCGCTGCCGTTTGGACTCAGGGGCAACGCCACTCAAGCTCTCATTCTC CTCGTCAACCGACAGATGGTTGATATAAAGGATGCTTTGGCGTTGTTTATGGAGCTTCAAATTGTTGGAGATAAGAACTTGAGGAATTTGGCTTTCTCTC ATGTTGTCAATAGTATTAAGAGAATGAATAAGAAGCATAAGAACGAAGCCAAGAATCGTGCTCTTCAGAATATCCTCTTTACAATGTTGCAGCAAGAGGA TGAATCTCTGGCGAAAAGAGCGCTCATTACACTGTGTGAGCTTCATAGGAGAAAGGTTTGGTTTGATGATAGAACTGCTAATGCGATTTGCATGGCTTGC TTCCATTCTTCATCAAGGATCATGATTGCTGCTTTGTCGTTCGTATTGGATTTTGAGAAGATACAAGATGATCACAACAGTGACAGTGAAGATATGAGCA GCGACGATGATGCCAATCCGCTTCATGCTCAAGTTGCCATTAATAAAGAGGCTATTTATAAGGCAACCAAAACGGGTACTTCAGCTAGTAAGAAGAAAAA GAAAGCAAAGTTGGAGCGTGCTGTCCGTAGCATGAAAAGGCAGCAGCGCTTGGCATCAGAGAAAACCAGTTCCAATTATTATTCACCTCTTAACCATCTC AAGGATGCTCAGGGGTTTGCCGAGAAACTGTTCTCTCGTCTCAAGACTTGCAATGAACGTTTTGAGGTTAAAATGATGCTGATGAAAGTCATTGCTCGAA CTATTGGGCTGCACCATTTGATCTTGTTGAACTTCTATCCTTTCCTGCAAAAGTATTGCCAGAGGTCGTCTGAATTTCTTCAGCCACATCAAAGAGATGT CACTAGTTTGCTTGCCGCAGCGGTTCAGGCTTGTCATGATATGGTCCCTCCTGATGCAGTTGAACCTTTATTTAGACAAATCGTTAATCAGTTTGTACAT GATCATTCCCGTCCAGAGGCCATTGCTGTTGGACTTAATGTCATCAGGGAAATATGTCTGCGAATTCCTTTGTTGATGACTGAAGACTTGCTCCAGGATC TCGTGTTATACAAGAAACAACACGAGAAAGCTGTTTCTGCAGCTGCTCGATCACTCATGGTCTTATTCAGAGAGATCTGCCCTTCATTGTTGGTTAAGAA GGATAGAGGTCGACCCATAGACCCAAAGGCAAAGCCGAAAGCTTATGGAGAAGCTCCTCCTGTAGCCAGTGCTGTTCCTGGAATTGAATTACTAAACGAG GCTGCTGATACCGAGAGTGATGAAGACGCTGAAGATGATGGAGACGATTCTCAGTCAGATGCTTGTCCTGATGATGCCAGTAATGACGAATTGTTTGGCA GCGATGATGAGGAAAATGCTGTGCAGGATGACGAGGAAGATGGAAGTGATGATGACGATTTACGAGCTGATTTGGATGACGGTAGTGACGACAATGTGGA TGAAATCGGCAGTGGGGAAGATGACGGAGAGGAGGAAGATGATGACGAGGATGAGGGAGAAGATGAAGAAGAGTCTAGTGACCCAGAGGAAGCGGATGAT GAGGTCGAAGTAAGCAAATCTAAATCGAATAAGAGAAAGCGGTCGGATTTCAACGGAGAGCTTATTGCAGCCGACACAAGCCTTCGAGCTTTGAAAAAAC TAGCAGAGGAGAATCTGAGATCTCCTTCATCAGATCCGGGAGATGGTTTCTATTCTCAAGAGGATTTCAAAAGGATTAGGGAACTGAAGGCGAAAAAGGA GGCCAGTATTGTGCTGATTCGACATGGTTTCAAGCTTCCATCATCTGACCAATTATCTATGAAGCCTATGGATCCTTCCAAGCTTGAGGCTCACATCCGG CACAAAATGAACAAGACAGAAAGACTAGAACTCGTGAAGGCCGGGAGGGAAGATAGAGGAAAGTACCAAGCTCGTAGTGCTATTAAAAAGAACAAGACCG GAGGTCTAAGCAATCAGCAGAAGAACCACAAGAAGAAGATGCCACTGGCCGCAAAACGTTCAACAATCGTCAGAAACCGAGCAAATAAACTAAAGAAGAG CGATCGTTTGGGCAAGCAGTTCCGTGGAAAGAAAGCTTGGAAGTAA
AA sequence Show only first row Show all	>Lus10036950 pacid=23171152 polypeptide=Lus10036950 locus=Lus10036950.g ID=Lus10036950.BGIv1.0 annot-version=v1.0 MKIDPEGYTTELALIYSQFNCALELFQQQAALSFASASGVCADPTIAKELGDRTMFLSHVAPFYSKELTKFPGQLVDFLKSSARSLPFGLRGNATQALIL LVNRQMVDIKDALALFMELQIVGDKNLRNLAFSHVVNSIKRMNKKHKNEAKNRALQNILFTMLQQEDESLAKRALITLCELHRRKVWFDDRTANAICMAC FHSSSRIMIAALSFVLDFEKIQDDHNSDSEDMSSDDDANPLHAQVAINKEAIYKATKTGTSASKKKKKAKLERAVRSMKRQQRLASEKTSSNYYSPLNHL KDAQGFAEKLFSRLKTCNERFEVKMMLMKVIARTIGLHHLILLNFYPFLQKYCQRSSEFLQPHQRDVTSLLAAAVQACHDMVPPDAVEPLFRQIVNQFVH DHSRPEAIAVGLNVIREICLRIPLLMTEDLLQDLVLYKKQHEKAVSAAARSLMVLFREICPSLLVKKDRGRPIDPKAKPKAYGEAPPVASAVPGIELLNE AADTESDEDAEDDGDDSQSDACPDDASNDELFGSDDEENAVQDDEEDGSDDDDLRADLDDGSDDNVDEIGSGEDDGEEEDDDEDEGEDEEESSDPEEADD EVEVSKSKSNKRKRSDFNGELIAADTSLRALKKLAEENLRSPSSDPGDGFYSQEDFKRIRELKAKKEASIVLIRHGFKLPSSDQLSMKPMDPSKLEAHIR HKMNKTERLELVKAGREDRGKYQARSAIKKNKTGGLSNQQKNHKKKMPLAAKRSTIVRNRANKLKKSDRLGKQFRGKKAWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13160			ARM repeat superfamily protein...		Lus10036950 [exp]	0	1
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	1.7	0.9106
AT3G01160			unknown protein		Lus10041866 [exp]	2.2	0.8707
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	3.5	0.8882
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10020269 [exp]	4.5	0.8516
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	6.0	0.8947
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	6.3	0.8108
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	8.5	0.8700
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10005385 [exp]	8.6	0.8996
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	10.2	0.8615
AT5G41190			unknown protein		Lus10008488 [exp]	10.6	0.8208

Compare expression of checked genes

Lus10036950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.