Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028682 [exp] 109 / 4e-28 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10000860 [exp] 102 / 2e-25 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10037467 [exp] 97 / 2e-23 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10003922 [exp] 92 / 6e-22 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036954 [exp] 86 / 9e-20 ND 48 / 5e-06 Lus10037619 [exp] 57 / 2e-10 AT5G49610 48 / 5e-07 F-box family protein (.1) Lus10002769 [exp] 47 / 3e-06 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10007302 [exp] 46 / 8e-06 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10013987 [exp] 45 / 2e-05 AT3G23950 59 / 1e-08 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149000 [exp] 48 / 1e-06 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.011G000700 [exp] 46 / 5e-06 AT3G15910 58 / 5e-09 unknown protein Potri.010G224400 [exp] 43 / 7e-05 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.011G004800 [exp] 42 / 0.0001 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.009G132400 [exp] 42 / 0.0002 ND / Potri.007G037500 [exp] 41 / 0.0003 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1) Potri.007G027200 [exp] 40 / 0.0007 AT5G07610 84 / 1e-17 F-box family protein (.1) Potri.007G027300 [exp] 40 / 0.0008 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.008G038000 [exp] 39 / 0.001 AT1G64290 175 / 3e-51 F-box protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036951 pacid=23171061 polypeptide=Lus10036951 locus=Lus10036951.g ID=Lus10036951.BGIv1.0 annot-version=v1.0 ATGCCGGAAGAAGATTGGGGACTTTTTTCTCCATCAATGGCTGGATTATCACCATCGTTGTGCATCAACGATGTTCTGTCACTTCATTTACTGGTGGAAG TTCTTGCTAGGCTCCCGTTGAGGCATGTGTTCCAATGCAAGTCCGTTTTCACGCTGTGGCTCTCGTGTATACAGGACAAAGATTCGTGTTTCGTAGGCCG ATTTGTTCAATGGAATGAGGAAAAGAATGGTGATCTGCAGCAGAAACAGATGATCCCTGTGGTGACGAATCGAAATGAAATGATTCTGGTACAACCTTCC TGCAGCATTTCTGTTAGTGCTTCCCAAGTCTCACTGGACTTCCTCCCTTTCTTTCATGAGTTGGTTTCTTCTACGAAAGAGATATTGATTCTTTGCAAGG TCTTGTTAGCATCTAACAATGGCTTGCTAGTATGCTCCCCAAACAACTTGAGGTATACCGAGTATTACATATGCAACCCTCTCACTAGGCAGTGGCTTGC CGTCCCGCTTCCTCCTCGTAGCAAAAATATACGATTGGTGTGGGGTTTATTTGTGATTCGTTCTACAACGTCAATGATTCCATTGTGA
AA sequence Show only first row Show all	>Lus10036951 pacid=23171061 polypeptide=Lus10036951 locus=Lus10036951.g ID=Lus10036951.BGIv1.0 annot-version=v1.0 MPEEDWGLFSPSMAGLSPSLCINDVLSLHLLVEVLARLPLRHVFQCKSVFTLWLSCIQDKDSCFVGRFVQWNEEKNGDLQQKQMIPVVTNRNEMILVQPS CSISVSASQVSLDFLPFFHELVSSTKEILILCKVLLASNNGLLVCSPNNLRYTEYYICNPLTRQWLAVPLPPRSKNIRLVWGLFVIRSTTSMIPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036951 [exp]	0	1
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	4.5	0.7844
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	5.7	0.7768
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	15.5	0.7366
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	15.9	0.7485
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	16.4	0.7663
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	17.2	0.7605
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	20.0	0.7724
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	21.2	0.7306
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	27.9	0.7500
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	31.3	0.6820

Compare expression of checked genes

Lus10036951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.