Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26115 420 / 3e-145 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) AT1G48420 48 / 7e-06 DCD, ATACD1, ACD1, D-CDES A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031898 [exp] 62 / 4e-10 AT1G48420 584 / 0.0 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1) Lus10031325 [exp] 54 / 1e-07 AT1G48420 497 / 2e-176 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1) Lus10006235 [exp] 0 / 1 AT3G26115 144 / 8e-40 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051200 [exp] 425 / 7e-147 AT3G26115 392 / 1e-133 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2) Potri.012G038900 [exp] 62 / 3e-10 AT1G48420 588 / 0.0 A. THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE 1, D-cysteine desulfhydrase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10036952 pacid=23171003 polypeptide=Lus10036952 locus=Lus10036952.g ID=Lus10036952.BGIv1.0 annot-version=v1.0 ATGAACCTCCAATGCTTAACCACCAGAACGGCAACCACCGCCGCCGCTATAACAAACTGCCGGCATCAATTCATCTGCCAAATCTCCACAAACTCCCCGG GTTCCGGCGAAGAACTCGTTTCGAAGCTTCTCAATAGGAAATGGGCGTTAGGGAATCCGGGTTCAGCGTTCCATCGAATCCAGCTCTCCCCTTCGCCTCA ATTGTCCCGCAGTTGTAGTTTAAGCTTATCAGCTGGAGAACCGGGAGTCGAAAATAAGCGTAAAGGTCCCTCCTTTTACGTTGTTCGTGACGATTTGCTG CATCCTCTGGCCAACGGAAACAAGGCCAGGAAGTTAGACGCCCTGATCCCTCTCCTCCGTGCCAATTCCGTCACCGATGTGGTCACATGTGGAGGATGCC AGAGTGCACATACTGCAGCTGTAGCTGTTTTGTGTGCTGAAAGAGGGATAAGGTCACACCTGCTATTGAGAGGGGAGCAGCCTGGGATTCTGACTGGTTA TAATCTCATCTCCACAATGTATGGCCATGTCACTTACGTGGCGAGATCGGTGTATGCAGATAGGGAAGCTATGCTGAAGAGCCATGCTAATATGGTTGCT GGTAGCAGTGGTCGTGTGCTGCGGTGTAGCGATATCTCGGAGGCTTCTTTCGAAAATGAGCAATCCAGGGAGGACGAATGTCCAAGAAAGGTTTTGATTA TCAATGAAGGAGCCGGTGATGGTGTAGCATTGCTTGGTCTAATCCGCTTGGTCAACTACCTATCTCAGGATCATCTATTAGGAAAATGCAGACCGGCAAC TTTGATCGTAGACTCCGGAACTGGCACAACAGCTATTGGTTTAGCACTTGGAGCCTTATGCTTGAGACTTCCATGGAAGGTAGCTGCAATCATGCTAGCC GATGCAATCGACCAACACAAAGTCAAGGAGAACCGTCTTCTCTCCGAATTCAGTACACGTTACGAAGTCCATCTTGACCACAACGATCTCGAGGGACTCG TTCATTGGGTTCCGCGGCAGCGTCCGAGAAAATTTGGGAAGATATTGGAAGGGGAGATGGAGAAATGCCAGGCGATTGCGAGGCAAACCGGAGTTCTGGT TGATCCTGTGTACACTCTGGCAGCCTGGGAAATGGCGGCTCAACTTAGCACGGAAGAAGAAGAGGAAGAGAGGGTGGTGGTGATGATTCATACAGGGGGG ACTCTTGGTTCGTTTGGTTTGGCACAGAGATACAAGTCTCAGTTTGCTAACCTGTAG
AA sequence Show only first row Show all	>Lus10036952 pacid=23171003 polypeptide=Lus10036952 locus=Lus10036952.g ID=Lus10036952.BGIv1.0 annot-version=v1.0 MNLQCLTTRTATTAAAITNCRHQFICQISTNSPGSGEELVSKLLNRKWALGNPGSAFHRIQLSPSPQLSRSCSLSLSAGEPGVENKRKGPSFYVVRDDLL HPLANGNKARKLDALIPLLRANSVTDVVTCGGCQSAHTAAVAVLCAERGIRSHLLLRGEQPGILTGYNLISTMYGHVTYVARSVYADREAMLKSHANMVA GSSGRVLRCSDISEASFENEQSREDECPRKVLIINEGAGDGVALLGLIRLVNYLSQDHLLGKCRPATLIVDSGTGTTAIGLALGALCLRLPWKVAAIMLA DAIDQHKVKENRLLSEFSTRYEVHLDHNDLEGLVHWVPRQRPRKFGKILEGEMEKCQAIARQTGVLVDPVYTLAAWEMAAQLSTEEEEEERVVVMIHTGG TLGSFGLAQRYKSQFANL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	0	1
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10017586 [exp]	2.0	0.7576
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	3.2	0.7524
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10013621 [exp]	3.9	0.7128
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	4.9	0.7249
AT1G73440			calmodulin-related (.1)		Lus10015884 [exp]	6.2	0.6681
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10025724 [exp]	7.9	0.6459
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	10.1	0.7290
AT3G04950			unknown protein		Lus10000934 [exp]	14.7	0.6845
AT1G77280			Protein kinase protein with ad...		Lus10024154 [exp]	17.1	0.6911
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10036049 [exp]	23.5	0.6519

Compare expression of checked genes

Lus10036952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.