Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26120 415 / 1e-137 TEL1 terminal EAR1-like 1 (.1) AT1G67770 369 / 8e-121 TEL2 terminal EAR1-like 2 (.1) AT5G61960 135 / 9e-33 AML1 MEI2-like protein 1 (.1.2) AT1G37140 125 / 2e-32 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G07290 132 / 1e-31 AML4 MEI2-like 4 (.1) AT4G18120 127 / 3e-30 AML3 MEI2-like 3 (.1.2) AT1G29400 124 / 2e-29 AML5 MEI2-like protein 5 (.1.2) AT5G07930 113 / 1e-27 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT2G42890 106 / 1e-23 AML2, MEI2 MEI2-like 2 (.1.2.3) AT2G37340 47 / 2e-05 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006234 [exp] 892 / 0 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002046 [exp] 620 / 0 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10002047 [exp] 231 / 6e-72 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10018195 [exp] 124 / 4e-31 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2) Lus10011968 [exp] 128 / 1e-30 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 128 / 1e-30 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10018194 [exp] 122 / 6e-30 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10043204 [exp] 125 / 1e-29 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10020769 [exp] 125 / 1e-29 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051100 [exp] 286 / 2e-87 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 285 / 5e-87 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 141 / 1e-36 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.002G088200 [exp] 131 / 5e-33 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2) Potri.012G107100 [exp] 135 / 6e-33 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.015G106000 [exp] 133 / 4e-32 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.005G202000 [exp] 128 / 1e-30 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 126 / 4e-30 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.001G067300 [exp] 125 / 1e-29 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 123 / 5e-29 AT5G07290 645 / 0.0 MEI2-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10036953 pacid=23171268 polypeptide=Lus10036953 locus=Lus10036953.g ID=Lus10036953.BGIv1.0 annot-version=v1.0 ATGGGAGACGCCGGCGGTGGTTTCTTCCGTTTCCCCGCCTCCCTCGACCCTCAAGCGCAAGAGTTCCGTCCCCGGGACCACCACCACCACGTCATCACTC CACATCACCTCGCCGTCATCCCGTCTCCCCCCCAACCCTTCAACCACCAGCCCCCTCCTCCCCCCCCCCTGCCGGTACCGTTGCCGTTCGTAGGTGGTGG AGCGGTGATTGGGTACCAACATGATCCTTTCCTCAACCATAGTAATTACGACTGTACAACTCCCCGGGAGGGTTTCAATCGCCGGGTCATCGGCGGAGGC GGAGAGCTACTGCCGCCGGCTGTTGCTCCGACGAGGGCGATTCTCATATGCTCGCTTCCCGTCGACGGAAGGGTTAGCGAGACGCTGGTCCGGCGAGAAT TGGAAGTGTTCGGCCCGGTGAGGGCCGTCCAGATGGAGAGAATCCGCGACGGGATCGTCACCGTCCACTTCTACGACCTCCGCCCCGCTGAGGCGGCGCT GGAGCCGACCCGCGACCTCCGCCACGCTGAGGCGGCGCTGGACGCCATCCGAGACCACCACCACGAACACATGCACAACAACAACTGTCGCCGCTGCCGT CCTTTCTCCGGCTGGTCCACAGTGTGGTCCCAGTTCACAATCCCGTGTATTCATGCCATGCCTGAAGGTCAAAACCAAGGGACGATCGTCGTCTTCAATC TCGACCCAAACGCCTCGGCATCCTACCTCCGACACATCTTCCAATCCTACGGACCGGTGAAAGAGATTAGAGAAACGCCGATGAAGAGGCAGCAGAGGTT CATCGAATTCAACGACGTGAGAGACGCCGCCAAGGCGTTGAGCAACATGAACGGAAAGGAGATTCTGGGGAAGCCAGTAGTGATCGAGTTCAGCAGACCT GGCGGGTTCAACAGGAAGTTGTCGTTCATCAATTCATCTTCCTCCAAAATCGGTACTCCCAAGTTCATCCCGTTTTCTCCGCCGGCGAGGAAGTTTAACA ACAGTCCTCCTCCCCCATTAGCTCCCCCGTTAGCTCCTAGGCAGATTCTGAAGAGGAATTCGAGCATTGAGTCACCAAAGAAAGGGATAATGAAGTTCAG CCAAAGTAAGCCATGGAAAGGTTGGAAAGCTGGGAGAAACTATAACAAATTATATGATAGCAGGTTCTTGATAAACGATGATGAACCAATCGAGGAATCA TCTTCATCATCATCATCGAAGAATTGGAGTAGCAGTAGTAGTACTGATTTGAGAACTACTGTAATGATCAAGAACATACCCAACAAGTACAGTCAGAAGC TGCTGTTGAACATGCTGGACAACCACTGCATTCACTGCAATGAACAGATCGCCAATCATGATGATAATGAAGATGGAGAAGAAAAGAAGCATCCTTTCTC ATCATATGATTTCGTATATCTCCCAATTGATTTCAACAACAAGTGCAATGTGGGATATGGGTTCGTGAACATGACATCGCCAGAGGGAGCAAGGAGGCTG CACAAGGCTTTCAACAACCAGCATTGGGAGGTTTTCAACTCCAAGAAGATCTGTGAAGTCACCTATGCTAGAGTCCAGGGGTTGGAGGCATTGAAGGAGC ATTTCAAGAACTCCAAGTTTCCAAGCGAGGTGGAGCATTATCTCCCGGTGGTTTTCTCCCCGCCTAGAGATGGGAGCCAGTTGACTGAGCCAGTACCCAT TCTTTGCTTAAAGCAGCAGCAGAGTGAGGAAGGAGAAGACGTAGGGGTGATGATGCGGAATACCGTTCTTGAAGATGGTCTGAAGAAGAAGTGCAGTTTG GTTGGAGAAGGGAACGGCGGCGGCGGAAGGAGGAGGGATGGGATTAGTGACAGTGACAGTGACAGCAGCAGTAGCAGCAACAGTGGAATTGTGAGCAAGA GATAG
AA sequence Show only first row Show all	>Lus10036953 pacid=23171268 polypeptide=Lus10036953 locus=Lus10036953.g ID=Lus10036953.BGIv1.0 annot-version=v1.0 MGDAGGGFFRFPASLDPQAQEFRPRDHHHHVITPHHLAVIPSPPQPFNHQPPPPPPLPVPLPFVGGGAVIGYQHDPFLNHSNYDCTTPREGFNRRVIGGG GELLPPAVAPTRAILICSLPVDGRVSETLVRRELEVFGPVRAVQMERIRDGIVTVHFYDLRPAEAALEPTRDLRHAEAALDAIRDHHHEHMHNNNCRRCR PFSGWSTVWSQFTIPCIHAMPEGQNQGTIVVFNLDPNASASYLRHIFQSYGPVKEIRETPMKRQQRFIEFNDVRDAAKALSNMNGKEILGKPVVIEFSRP GGFNRKLSFINSSSSKIGTPKFIPFSPPARKFNNSPPPPLAPPLAPRQILKRNSSIESPKKGIMKFSQSKPWKGWKAGRNYNKLYDSRFLINDDEPIEES SSSSSSKNWSSSSSTDLRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIANHDDNEDGEEKKHPFSSYDFVYLPIDFNNKCNVGYGFVNMTSPEGARRL HKAFNNQHWEVFNSKKICEVTYARVQGLEALKEHFKNSKFPSEVEHYLPVVFSPPRDGSQLTEPVPILCLKQQQSEEGEDVGVMMRNTVLEDGLKKKCSL VGEGNGGGGRRRDGISDSDSDSSSSSNSGIVSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10036953 [exp]	0	1
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	3.6	0.9887
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	4.7	0.9883
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	6.9	0.9826
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	9.5	0.9823
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10013681 [exp]	10.9	0.9770
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	11.6	0.9796
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	14.0	0.9810
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	15.2	0.9841
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	15.2	0.9791
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	18.3	0.9784

Compare expression of checked genes

Lus10036953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.