Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10430 48 / 5e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003922 [exp] 370 / 2e-126 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 372 / 7e-126 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037105 [exp] 255 / 7e-85 ND 44 / 1e-05 Lus10028682 [exp] 192 / 4e-57 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10000860 [exp] 178 / 8e-52 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10036951 [exp] 96 / 3e-23 ND 44 / 2e-05 Lus10037619 [exp] 70 / 4e-14 AT5G49610 48 / 5e-07 F-box family protein (.1) Lus10003923 [exp] 108 / 2e-09 ND 40 / 0.002 Lus10035796 [exp] 57 / 2e-08 ND 45 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 68 / 2e-12 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.008G038000 [exp] 54 / 1e-07 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.007G027300 [exp] 46 / 3e-05 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.010G254000 [exp] 45 / 7e-05 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.011G000700 [exp] 45 / 8e-05 AT3G15910 58 / 5e-09 unknown protein Potri.010G149000 [exp] 43 / 0.0002 AT5G49610 528 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036954 pacid=23171186 polypeptide=Lus10036954 locus=Lus10036954.g ID=Lus10036954.BGIv1.0 annot-version=v1.0 ATGGCTCGGGCGGATTCACCTGCTTTATTATGCATCAATGATGTTCTGACTCCTCATCTACTGACTGAAATATTGACTCGCGTTCTTTGGGTCGATTTGT TTGGGTGTAAGAATGTCTGCAAGCTCTGGCTCTCTTGTATTGATGATAATCCTGCTTTTGTTGGCGGTTTTTTTCTCCAGAGGGTTAGAGAAGTGTCCCA ATTGAATGAGGAAGATAAGCAGCTGAACCATGTCCAGTGGGATCACTGTCAAATCGTGGCGTTAAATACCACCTGTTATTGTGCTGATGCTTCTAAATTC TCTCTGGATTTCCTCCCTATACTGGAAGGCTTGGATCTTCGCCATAGCAGCTTGAAATACATAGTATTGGGATCATCAAATGGCTTGCTCTTGTGCACCC GTGGCATAGGCTCCGGTGAGAGATACTGCATTTGCAACCCGATTACTAAGAAATGGCTCGAGCTCTTCCCGTTCCCTCCTTGTGATGACAATATGGACGT TAAAGTTGGTTTCGTATGTGATCCATTCTACCGTTTCAACGAGGATGAGGGTTCGGTCAGTGTGAATGGTCAATTTGGATTCAAGGTGGTTCGTTTTTAT GCCTCTCGTTACAACGAGGGTGAGGGTATTCGCGATGTTAACGCGGAGCTGTTCTCATCGCAGGCGGGATGCTGGACTACTACTTATGGACTACCATTAC CAGACCATATCGATGGTATGATTGAAATTCTTATTGAAGGGCACATGGTTGACTGTAACGGGAAGCTTTACTGGATTGTGGAACATGGATGGCCAGTGGT GTCTCAAAGCATGATGTTGATGTCCTTGCTAATATGCAATGGCAATGCAGTTGGGCGGTGGAAGTTCGAGCGTATGCATCCCAGTGATCCCATGGTAGGG TATCTGTCCACCAAAGACATGTTGCTAGAATGCAATTTTGGAAGCAAAACCGTGATAGTGGTGTTCGACATCGAGGAAGACTCATCTGGGGAACTCTTCT ACGTGTTGCCCATTTATCTTCCACTTTGGCCCACCCCACTTCCCATGGTTTCCAAATGCTCGAGTAGCTGTGCTCTTAGTGTCCTTGGTTTGGTGCCTAT CTAG
AA sequence Show only first row Show all	>Lus10036954 pacid=23171186 polypeptide=Lus10036954 locus=Lus10036954.g ID=Lus10036954.BGIv1.0 annot-version=v1.0 MARADSPALLCINDVLTPHLLTEILTRVLWVDLFGCKNVCKLWLSCIDDNPAFVGGFFLQRVREVSQLNEEDKQLNHVQWDHCQIVALNTTCYCADASKF SLDFLPILEGLDLRHSSLKYIVLGSSNGLLLCTRGIGSGERYCICNPITKKWLELFPFPPCDDNMDVKVGFVCDPFYRFNEDEGSVSVNGQFGFKVVRFY ASRYNEGEGIRDVNAELFSSQAGCWTTTYGLPLPDHIDGMIEILIEGHMVDCNGKLYWIVEHGWPVVSQSMMLMSLLICNGNAVGRWKFERMHPSDPMVG YLSTKDMLLECNFGSKTVIVVFDIEEDSSGELFYVLPIYLPLWPTPLPMVSKCSSSCALSVLGLVPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036954 [exp]	0	1
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	2.0	0.8898
AT3G15351			unknown protein		Lus10015973 [exp]	7.3	0.8162
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	8.8	0.8746
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10039080 [exp]	8.8	0.8363
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	9.8	0.8206
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030223 [exp]	12.8	0.8218
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	17.4	0.8161
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	17.7	0.8229
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	18.1	0.8525
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	19.2	0.8391

Compare expression of checked genes

Lus10036954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.