Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16290 551 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037104 [exp] 814 / 0 AT1G16290 558 / 0.0 unknown protein Lus10000870 [exp] 78 / 7e-16 AT2G23810 149 / 1e-43 tetraspanin8 (.1) Lus10009605 [exp] 67 / 2e-11 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172300 [exp] 648 / 0 AT1G16290 567 / 0.0 unknown protein Potri.008G084100 [exp] 635 / 0 AT1G16290 569 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF01464 [flax] [poplar] SLT Transglycosylase SLT domain
Representative CDS sequence Show only first row Show all	>Lus10036958 pacid=23171308 polypeptide=Lus10036958 locus=Lus10036958.g ID=Lus10036958.BGIv1.0 annot-version=v1.0 ATGGATCTCCGACCCGAAGAAGATGTGATACAACTGCGAGAGATGCAAGACCGGTTTCCTGGGCGAAGTGAGGAAGCAATGCAGGGCGGCGGGAGTGGCT CTTCTCTGCTTCGTGGTGTTCATGGTGGTTGTGCTCTTTATGGCTTGGTGCGCCATCAACAACAACAAGTTCGACTCCGAAGTTTCCAGGCCTCGAGACT TAAATGGCTGGTACTTGTAACGCTCTCTAGGATCAGCAAAATGTCGGTTAGCTTCAAGTACTGGGATGATTGTGTTGATCCCAATGACTTGGAGGCGATG TGGAGGGAACCTGCTGTCAGCACTGAATGGCTGGACGCCGGCGAGACTCGCGGTCAGAAAATTCACATTTCACGTGATCCCGACGGCCAGACCTATTTAA CTCAAACAGAGATGAAGGCAGTAGCTGATATCATCGTCCGTAGGCACTTCGGTTCACAGATATCTCCAGATATGATATGTGCTATTGCTGAACTTGCAAG CGACAGGCAGCTTCTCTCTAGGCACTTTCATAAGAAATCTAAGGAGATCACTGTAGGAATAATGCAAATTTTCCCAAAAACTGCTCAGTGGTTGGAGAGA GATTTTGGCTACCGGATTTACGTACTTGGAGATAATCCAGACATTCTCTATAAGCCTTTTGTGAGTGTATATTTCGGTGCTGCATATTTGAAATGGCTGT CCAACTTCGAGCACAAAGAAAGAAGTGAAGAGTTCATTGTTAGGGCTTACCATGGTGGCACCAAAAAGGCAACACATAAATCAACTTTGCAATACTGGAA ACGGTACCTCTCAGTTAAAGAAAGTCTTCCTTCCAGACGATTTTCAAACGAAGGGACCTCTGGAAATACTGATTGTACTTCACCTAGGCCATCAGCATCT GCTTCTCATTCATCTTCTTCACAAAGCTCAGACGGTGATCATCTGCACTGGGACTCTAGATCTTCTCCTGAGGATATGGCAGAGATGTGGAATCAGCATG ACGTTGCTAGAGAATGGACGAAATCAGGGGAAAGGCGTGGAAAAGTACGTTTCTCGCATGACAAGGAACACAGACCATATTTGTCCCAAATAGAGACCAA GGCAGTTGCAAGCATAATTCTCTCGAAGCATTTCAGCACCAGAGGAGTTAGGCCATCAGTCCTCTGCGCGCTGGCTGAGATGGTTAGTATGCGTTTCCTC AATGGGATCGGACATCGAACTGGAATAATGGGCATCGACTACTCTACCGCCTTTTGGCTTTACACGGAGTTGGGCTACCGGGCATACAGAGTCGATTCGG CTGCTGATATGACCAAACCATTTCTGTCCATGTATTTCGGGGCCGCTTACATGGCATGGCTATCGGAATACGAGAGAAGGGAAAGAACTCCACAGTTTGT AGTGCAGGCATACATCGCTGGGCCAAAGAATGTGAGCCAGGAGACTGGTCCGCTTTGGCTTAAGTTCGAGCAAGCATTAGGCAACTACGAAGACATGAAG AGCTCGGGTTTGGCTCGAAATTACCTCTAA
AA sequence Show only first row Show all	>Lus10036958 pacid=23171308 polypeptide=Lus10036958 locus=Lus10036958.g ID=Lus10036958.BGIv1.0 annot-version=v1.0 MDLRPEEDVIQLREMQDRFPGRSEEAMQGGGSGSSLLRGVHGGCALYGLVRHQQQQVRLRSFQASRLKWLVLVTLSRISKMSVSFKYWDDCVDPNDLEAM WREPAVSTEWLDAGETRGQKIHISRDPDGQTYLTQTEMKAVADIIVRRHFGSQISPDMICAIAELASDRQLLSRHFHKKSKEITVGIMQIFPKTAQWLER DFGYRIYVLGDNPDILYKPFVSVYFGAAYLKWLSNFEHKERSEEFIVRAYHGGTKKATHKSTLQYWKRYLSVKESLPSRRFSNEGTSGNTDCTSPRPSAS ASHSSSSQSSDGDHLHWDSRSSPEDMAEMWNQHDVAREWTKSGERRGKVRFSHDKEHRPYLSQIETKAVASIILSKHFSTRGVRPSVLCALAEMVSMRFL NGIGHRTGIMGIDYSTAFWLYTELGYRAYRVDSAADMTKPFLSMYFGAAYMAWLSEYERRERTPQFVVQAYIAGPKNVSQETGPLWLKFEQALGNYEDMK SSGLARNYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16290			unknown protein		Lus10036958 [exp]	0	1
AT3G07750			3'-5'-exoribonuclease family p...		Lus10012336 [exp]	1.4	0.9656
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	2.6	0.9811
AT1G70510	HD	ATK1, KNAT2	ARABIDOPSIS THALIANA KN 1, KNO...		Lus10042103 [exp]	8.2	0.9298
AT5G01660			unknown protein		Lus10018307 [exp]	10.7	0.9632
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	12.2	0.9574
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	12.5	0.9618
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	17.1	0.9572
					Lus10002045 [exp]	18.1	0.9572
					Lus10041871 [exp]	18.3	0.9573
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	19.1	0.9481

Compare expression of checked genes

Lus10036958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.