Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69320 52 / 2e-09 CLE10 CLAVATA3/ESR-RELATED 10 (.1) AT1G26600 49 / 3e-08 CLE9 CLAVATA3/ESR-RELATED 9 (.1) AT1G73965 47 / 1e-07 CLE13 CLAVATA3/ESR-RELATED 13 (.1) AT1G68795 44 / 2e-06 CLE12 CLAVATA3/ESR-RELATED 12 (.1) AT1G63245 37 / 0.0003 CLE14 CLAVATA3/ESR-RELATED 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037107 [exp] 117 / 1e-34 AT1G73965 51 / 3e-09 CLAVATA3/ESR-RELATED 13 (.1) Lus10041496 [exp] 48 / 1e-07 AT1G68795 61 / 7e-13 CLAVATA3/ESR-RELATED 12 (.1) Lus10034267 [exp] 46 / 6e-07 AT1G68795 59 / 7e-12 CLAVATA3/ESR-RELATED 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093500 [exp] 50 / 1e-08 AT1G69320 62 / 1e-13 CLAVATA3/ESR-RELATED 10 (.1) Potri.010G130400 [exp] 47 / 2e-07 AT1G68795 65 / 1e-14 CLAVATA3/ESR-RELATED 12 (.1) Potri.008G115600 [exp] 46 / 2e-07 AT1G73965 67 / 1e-15 CLAVATA3/ESR-RELATED 13 (.1) Potri.010G160600 [exp] 47 / 4e-07 AT1G69320 48 / 1e-07 CLAVATA3/ESR-RELATED 10 (.1) Potri.012G059600 [exp] 44 / 2e-06 AT1G68795 59 / 3e-12 CLAVATA3/ESR-RELATED 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036960 pacid=23171178 polypeptide=Lus10036960 locus=Lus10036960.g ID=Lus10036960.BGIv1.0 annot-version=v1.0 ATGGAGAATACCACATCACATTCAACACCGACGATGTTGATCATGGCCGCCGCCGCCCTCCTCTTGTTTCTTTCCTTCTTCTTGTCCGCCGTCGAATCCT CATCGTCGCTATCAGCTTCTAGTAATAAACCTACTACATCACCACCACCACCGGTCCGCCGCCAGCTCTCCGCAACAACCGCCGCGGATTCTTCCTGCAG CACCGCTGTGTGCATGGAGCTTCGAAAAATGATAAAGTCCCGACGTCAACAAGCTGGCCGCCGTGAGAACAAGAGCTACACCGCCGGCGAGCATCAAGAT CGTCAAGAACAAGACAGCGGCGGGGGAGGAGGTGGAGAGATAGACATGAGGTACGGCGTTGAGAAGCGGTTGGTCCCTTCCGGCCCAAACCCTCTCCACA ACTAG
AA sequence Show only first row Show all	>Lus10036960 pacid=23171178 polypeptide=Lus10036960 locus=Lus10036960.g ID=Lus10036960.BGIv1.0 annot-version=v1.0 MENTTSHSTPTMLIMAAAALLLFLSFFLSAVESSSSLSASSNKPTTSPPPPVRRQLSATTAADSSCSTAVCMELRKMIKSRRQQAGRRENKSYTAGEHQD RQEQDSGGGGGGEIDMRYGVEKRLVPSGPNPLHN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Lus10036960 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	2.0	0.8533
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	4.6	0.8203
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	6.2	0.8344
					Lus10041330 [exp]	6.8	0.7259
					Lus10004594 [exp]	9.5	0.7897
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	12.2	0.8088
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Lus10037107 [exp]	14.6	0.6888
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	16.4	0.8058
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	16.7	0.7884
AT4G36210			Protein of unknown function (D...		Lus10033181 [exp]	18.3	0.7712

Compare expression of checked genes

Lus10036960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.