Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61240 483 / 1e-173 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G13910 433 / 6e-154 Leucine-rich repeat (LRR) family protein (.1) AT1G35710 132 / 2e-34 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G11010 132 / 3e-34 AtRLP34 receptor like protein 34 (.1) AT3G11080 130 / 1e-33 AtRLP35 receptor like protein 35 (.1) AT5G56040 127 / 1e-32 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G07180 127 / 2e-32 ERL2 ERECTA-like 2 (.1) AT4G20140 126 / 3e-32 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G36180 125 / 4e-32 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 125 / 5e-32 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037108 [exp] 569 / 0 AT5G61240 550 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10026651 [exp] 536 / 0 AT5G61240 549 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10004662 [exp] 522 / 0 AT5G61240 543 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10008712 [exp] 136 / 9e-36 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 134 / 7e-35 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10006045 [exp] 129 / 4e-33 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10036321 [exp] 129 / 5e-33 AT5G51350 957 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027688 [exp] 128 / 7e-33 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10019067 [exp] 127 / 1e-32 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093400 [exp] 503 / 0 AT5G61240 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.010G160700 [exp] 498 / 2e-179 AT5G61240 517 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.007G016700 [exp] 141 / 1e-37 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G124300 [exp] 141 / 2e-37 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.005G117700 [exp] 140 / 2e-37 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.007G001000 [exp] 137 / 2e-36 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.012G124100 [exp] 137 / 4e-36 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G045500 [exp] 135 / 3e-35 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G060400 [exp] 135 / 3e-35 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 134 / 4e-35 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10036961 pacid=23171165 polypeptide=Lus10036961 locus=Lus10036961.g ID=Lus10036961.BGIv1.0 annot-version=v1.0 ATGGCGCGTCATCTCCTTCTCTTCCTCCTCATCGGTCTCCTCCACACTATCGCCCTCTCGAAAACCCTCAAACGCGACGTGAAGGCACTGAACGAGATCA AGTCGTCACTGGGATGGAGAGTTGTGTACGCCTGGGTAGGAGACGACCCTTGCGGCGGCGACGGCCTCCAGCCTTGGTCCGGCGTCACCTGCTCCACTCA GGGAGATTACAGAGTCGTCACCGAATTGGAAGTGTATGCAGTGTCGATTGTCGGTCCATTTCCTACTGCGGTGACGAATCTGCTGGATCTCACCAGATTG GATTTTCATAATAACAAGCTGACAGGGCCGATCCCTCCTCAAATTGGGAGGTTGAAGCGTCTCAAGATACTGAATTTGAGGTGGAACAAGTTGCAAGATT CACTTCCTCCTGAAATCGGCGAGCTTAAGAGTTTGACACATTTGTATTTGAGCTTCAATAATTTCAAAGGAGAGATTCCAAGGGAGCTAGCTAATCTTCC CGAGCTTCGATATCTGTACTTGCAAGAGAATAGGTTCTCGGGGAGAGTTCCTGCAGAATTGGGAACGTTGCAGAATCTTCGCCACTTGGATGTTGGCAAC AATCATTTGGTGGGTACTATAAGAGAACTAATCCGGATTGAGGGTTGTTTCCCTGCGCTTCGCAACTTCTATCTGAACAATAATTATTTTACCGGAGGAG TCCCTACGCAGCTAGCTAACTTGACAAACTTAGAAATCTTGCACCTATCCTATAACAAGATGACTGGAGTAATACCCATTGGACTTGCTTCCATCCCGAA GTTGACATATCTGTACATCGAAGGAAGCTCGTTCAAGCCTGGCGTAAATCCAATAGGCATGCACAAAGTCTTCGAAGTATCTGATGCAGATTTTGTAGTT TAA
AA sequence Show only first row Show all	>Lus10036961 pacid=23171165 polypeptide=Lus10036961 locus=Lus10036961.g ID=Lus10036961.BGIv1.0 annot-version=v1.0 MARHLLLFLLIGLLHTIALSKTLKRDVKALNEIKSSLGWRVVYAWVGDDPCGGDGLQPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLTRL DFHNNKLTGPIPPQIGRLKRLKILNLRWNKLQDSLPPEIGELKSLTHLYLSFNNFKGEIPRELANLPELRYLYLQENRFSGRVPAELGTLQNLRHLDVGN NHLVGTIRELIRIEGCFPALRNFYLNNNYFTGGVPTQLANLTNLEILHLSYNKMTGVIPIGLASIPKLTYLYIEGSSFKPGVNPIGMHKVFEVSDADFVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10036961 [exp]	0	1
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	7.3	0.6245
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	13.5	0.6208
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	18.7	0.5863
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	22.9	0.5884
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	24.7	0.5542
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	33.5	0.5530
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	36.1	0.5513
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10008002 [exp]	39.9	0.5586
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10042477 [exp]	42.3	0.5528
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	47.3	0.5421

Compare expression of checked genes

Lus10036961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.