Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61250 501 / 1e-173 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 499 / 6e-173 ATGUS2 glucuronidase 2 (.1) AT5G34940 472 / 3e-162 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037109 [exp] 1028 / 0 AT5G61250 503 / 7e-175 glucuronidase 1 (.1.2) Lus10036963 [exp] 709 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 700 / 0 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 692 / 0 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 488 / 2e-168 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 483 / 2e-166 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 481 / 8e-166 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 477 / 2e-164 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 461 / 1e-157 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160800 [exp] 624 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 479 / 5e-165 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.018G121500 [exp] 461 / 1e-157 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 455 / 2e-155 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 436 / 7e-148 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036962 pacid=23170989 polypeptide=Lus10036962 locus=Lus10036962.g ID=Lus10036962.BGIv1.0 annot-version=v1.0 ATGTCGAGTTTCAATGTTCTTCTCCTTCTCTGTTCAATCATCCTATCAAGTTTCTTCACCCTATCGTACTCTGATCATCCTCACTATGAAGATGTCCACC ATGCTCACCACAAGATGAAGGACCCGGATGAAATCACCGTCACGATCAAATCAGGCGCCGCTGTATCCCACACTGCCGACGACTACGTCTGCGCAACTCT CGATTGGTGGAGGAAAGACAAATGCGATTACCGACACTGCCCGTGGGGAAACGCTGGAATTCTTGATGTGGATCTTAACAATACACTTTTGGCCAAAGCT ATCAAGGCGTTTGATCCGTTGAGGCTTAGAGTGGGAGGATCATTGCAGGATCTGGTGACTTATGAAGTTGGAGGAGCTGTCGGTATTCATCCCAGCTTCG TGAAGGACAAAGATGTGATGCTTGGGTTCAAACCGGGGTCTCTTCCCATGAAAAGATGGGACGAGCTTAATGAATTCTTCGCTAAAACTAATACCAAAGT AATTTTTGGTTTGAATGAGCTCTCTGGCAAGAAAAAGGAAAACCCGTCGACGACTCAAATGGTAGGAGACTGGGACCCTACTAATGCTCGCGATTTCATG AACTACACTGTTCAAAAGGGATACAAGATTGATGCCTATGAATTGGGAAATGAGTTGTGTGGTGATGGAGTAGATGCTAAGATAGATCCGGAGCAGTATG CAAAAGATACTAAAGAGCTAAGGAAAGTCTTGAATGAATTGTACCCGGATCCTAAGTCCAGGCCCCAAGTTCTGGCTCCTGGAGGTTTCTTTTTCAAGGA ATGGTTCAAAACCTACCTTCATGCTTGCGGACCAAACGTTATCGATGGCGTAACCCACCATGTCTACAATCTTGGAACTGGTGGTGATCCGAAGATAATA GACAGGATTCAAGATCCACATTTCCTGAGCGAGGTAGTTCAGCTGTACAGGGACGTTCAGGAAGTAGCGGAGCAGTCTGGATCAGGAGCATCTCCTTGGG TCGGAGAGGGAGGCGGAGCTTACCTAAGCGGTGGTATAAATGTTCAATCCACTTTCGTTGATGGATACTGGTACTTGGATCAGCTTGGCTTGGCCGCAGT TCACAGCCATAAGGCCTACTGCAGACAAGCCATTGTTGGTGGAAACTACGGCTTCCTCAAAAACGACGTCTTTACCCCTAACCCTGATTACTATGGTGCA CTATTATGGCATCGGTTGATGGGGACCGGAGTTCTAGCAACCAGCCACAACGGATCTCCATTCCTTAGGGCATATTCACATTGCTCTAAGAAGAAGTCTG GAGTTACTCTGATGCTGATCAACATGTCGAAAACTTCGACATTCCATATCATGATCACCGACGAATTGAACAACCACCACAAGGATTCTGATTCAAGCCA TCTCAAAGAGGAAAGAGAGGAGTACCATTTGACACCAGAAGGAGGAAATATCACGAGCGATGTCGTTCTTCTGAACGGAGTTCCGTTGCAGCTTACAGCT TCCGGTGACATCCCGGAAATGCCTCCGAAGCTTGCCCCAGCTTCATCTCCGGTGACAATGGTTCCTGGCTCTTTTGTTTATGTATCCATTAAGGATTTCA AGGCCCCTGCCTGCTGA
AA sequence Show only first row Show all	>Lus10036962 pacid=23170989 polypeptide=Lus10036962 locus=Lus10036962.g ID=Lus10036962.BGIv1.0 annot-version=v1.0 MSSFNVLLLLCSIILSSFFTLSYSDHPHYEDVHHAHHKMKDPDEITVTIKSGAAVSHTADDYVCATLDWWRKDKCDYRHCPWGNAGILDVDLNNTLLAKA IKAFDPLRLRVGGSLQDLVTYEVGGAVGIHPSFVKDKDVMLGFKPGSLPMKRWDELNEFFAKTNTKVIFGLNELSGKKKENPSTTQMVGDWDPTNARDFM NYTVQKGYKIDAYELGNELCGDGVDAKIDPEQYAKDTKELRKVLNELYPDPKSRPQVLAPGGFFFKEWFKTYLHACGPNVIDGVTHHVYNLGTGGDPKII DRIQDPHFLSEVVQLYRDVQEVAEQSGSGASPWVGEGGGAYLSGGINVQSTFVDGYWYLDQLGLAAVHSHKAYCRQAIVGGNYGFLKNDVFTPNPDYYGA LLWHRLMGTGVLATSHNGSPFLRAYSHCSKKKSGVTLMLINMSKTSTFHIMITDELNNHHKDSDSSHLKEEREEYHLTPEGGNITSDVVLLNGVPLQLTA SGDIPEMPPKLAPASSPVTMVPGSFVYVSIKDFKAPAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10036962 [exp]	0	1
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	1.7	0.8374
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	2.4	0.8800
AT5G01020			Protein kinase superfamily pro...		Lus10036762 [exp]	4.5	0.8350
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	7.7	0.8373
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	8.5	0.8404
AT4G33625			unknown protein		Lus10020442 [exp]	8.9	0.8067
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	13.4	0.8212
AT3G55420			unknown protein		Lus10023413 [exp]	14.7	0.7782
AT1G28120			unknown protein		Lus10030429 [exp]	15.9	0.8029
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	20.1	0.8204

Compare expression of checked genes

Lus10036962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.