Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07830 504 / 5e-175 ATGUS2 glucuronidase 2 (.1) AT5G61250 500 / 2e-173 ATGUS1 glucuronidase 1 (.1.2) AT5G34940 474 / 2e-163 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037110 [exp] 920 / 0 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 800 / 0 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10036962 [exp] 692 / 0 AT5G61250 501 / 8e-174 glucuronidase 1 (.1.2) Lus10037109 [exp] 691 / 0 AT5G61250 503 / 7e-175 glucuronidase 1 (.1.2) Lus10021652 [exp] 506 / 5e-176 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 504 / 6e-175 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 497 / 2e-172 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 497 / 3e-172 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 457 / 2e-156 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160800 [exp] 703 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 514 / 4e-179 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.018G121500 [exp] 480 / 2e-165 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 466 / 1e-159 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 464 / 3e-159 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036963 pacid=23171107 polypeptide=Lus10036963 locus=Lus10036963.g ID=Lus10036963.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTTTCAGAGCTTTCCTCGTCTACTCACTCTTCCGCTCGACCCTCTCAGTGCTATGCTCCGCTGACACTTCTAGGATCACCGTCACGATAC AGTCAGTGAACTCCATAGCGAAAACCGACAATGATTTCATCTGTGCAACTCTAGATTGGTGGCCCAAGAACAAGTGTGACTACAACCAGTGCCCTTGGGG ACAAACCAGCGCCCTGAATCTGGATCTGAAGAACACCAATCTGGCAACAGCTATCAAAGCTTTCGATCCGTTGAGGATTCGGGTTGGGGGGTCGTTGGAG GATCTGGTGGTTTACAAAGTTGGGAAAGCGATCAAGAGATTCCCAAAGTTTAAGAAGCTGAAAGGTGGGATGTTTGGGTTCAGCAGAGGTACTCTCACCA TGGATAGATGGGATCAGCTCAATCAGCTTTTCACCAAAACAAATGCCAAAGTCATCTTTGGCCTCAATGCTCTGGTTGGGAAAAGAAAGAAAGATGAATC TTCCACTCTCTGGATCGGAGACTGGAACTCGCAGAATGCTCGAGATTTCATGAACTATACCGTTCAGAAGGGCTATAAAATCGACTCTTACGAACTCGGA AATGAGCTGAGCGGCTCGGGGGTTTCTGCTCGGGTGGAACCTGAGCAGTATGCAAAGGACACAATCAAAGTCAGGAAAGCTGTAAATGAATTATATCCAG ATCCCAATTCCAGGCCTTTAGTATTGGGTCCTGCCGGATTCTTCGATAAGGAATGGTTCAAGAAGTACCTTCAAGCTGTTGGACCGAACGTTGTCGATGG CGTAACCCACCACATTTACAATCTCGGCGCAGGAGTGGATTCCAAGCTGATTAATAAGGTTCAAGATCCGTTCTTTCTCGACAAAGTGGCTCAGACGTTC AAGGAAGTTCAGGATATTGTCGAGCAATCCGGAACCGCTGCAGCTCCGTGGGTCGGGGAATCGGGTGGAGCTTTCAACAGCGGTGGAAAGGACGTTTCAA ACACTTTCGCTAATGGGTTCTGGTACTTGGATCAGCTCGGTATGACCTCGACTTTCGGCCACAAGGCTTACTGCAGACAATCCCTTGTTGGTGGAAACTA TGGATTGCTTAGGAGTGATAGTTTCACTCCAAATCCCGACTATTATGGTGCACTTTTGTGGCATCGGTTGATGGGGACCATAGTGTTGAGAACGATCCAT GACGGGTCTCCATACCTGCGGGCATACTCACATTGCTCCAAGAAAAATTTTGGAGTGACTTTGCTGCTGATCAACATGTCGAATTCGACGACATTCAACG TTTGGGTGACTAACGATCTGAACCTTTACCGGACAACGACCGATTCGACCATTCTGACAGAGGATAGGGAAGAGTACCATCTGACACCTGAAGGTGGGAA TATTCAGAGCGATGTTGTGCAGCTGAACGGGACTCCATTGAAGCTGAGTTGTGGTGAGATTCCGATGATGGATCCGAAGCTCGTACCGGCTTCGTCCACG GTGACTGTTGCTCCGGATTCGTTCGTTTATGTCAACATCAAGGATTTCAAGGCACCTGCTTGCTAG
AA sequence Show only first row Show all	>Lus10036963 pacid=23171107 polypeptide=Lus10036963 locus=Lus10036963.g ID=Lus10036963.BGIv1.0 annot-version=v1.0 MAAAFRAFLVYSLFRSTLSVLCSADTSRITVTIQSVNSIAKTDNDFICATLDWWPKNKCDYNQCPWGQTSALNLDLKNTNLATAIKAFDPLRIRVGGSLE DLVVYKVGKAIKRFPKFKKLKGGMFGFSRGTLTMDRWDQLNQLFTKTNAKVIFGLNALVGKRKKDESSTLWIGDWNSQNARDFMNYTVQKGYKIDSYELG NELSGSGVSARVEPEQYAKDTIKVRKAVNELYPDPNSRPLVLGPAGFFDKEWFKKYLQAVGPNVVDGVTHHIYNLGAGVDSKLINKVQDPFFLDKVAQTF KEVQDIVEQSGTAAAPWVGESGGAFNSGGKDVSNTFANGFWYLDQLGMTSTFGHKAYCRQSLVGGNYGLLRSDSFTPNPDYYGALLWHRLMGTIVLRTIH DGSPYLRAYSHCSKKNFGVTLLLINMSNSTTFNVWVTNDLNLYRTTTDSTILTEDREEYHLTPEGGNIQSDVVQLNGTPLKLSCGEIPMMDPKLVPASST VTVAPDSFVYVNIKDFKAPAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10036963 [exp]	0	1
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10010737 [exp]	2.4	0.8523
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10018453 [exp]	4.5	0.8054
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10017713 [exp]	6.1	0.8619
AT1G54520			unknown protein		Lus10006109 [exp]	10.5	0.8419
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10018158 [exp]	12.5	0.8310
AT2G21180			unknown protein		Lus10026283 [exp]	15.7	0.7671
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	20.0	0.8413
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	20.5	0.8418
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	20.8	0.8409
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	21.2	0.8315

Compare expression of checked genes

Lus10036963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.