Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13920 77 / 4e-16 Remorin family protein (.1) AT1G69325 69 / 1e-14 Remorin family protein (.1) AT5G61280 58 / 9e-10 Remorin family protein (.1) AT1G67590 51 / 3e-07 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037111 [exp] 315 / 3e-108 AT1G13920 91 / 4e-21 Remorin family protein (.1) Lus10004665 [exp] 128 / 1e-34 AT1G13920 96 / 4e-22 Remorin family protein (.1) Lus10026649 [exp] 125 / 1e-33 AT1G13920 97 / 2e-22 Remorin family protein (.1) Lus10034714 [exp] 58 / 1e-09 AT5G61280 98 / 5e-24 Remorin family protein (.1) Lus10021650 [exp] 58 / 3e-09 AT2G47210 552 / 0.0 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160900 [exp] 96 / 1e-22 AT1G13920 99 / 1e-23 Remorin family protein (.1) Potri.008G093300 [exp] 91 / 6e-21 AT1G13920 80 / 1e-16 Remorin family protein (.1) Potri.015G049700 [exp] 69 / 1e-13 AT5G61280 113 / 2e-30 Remorin family protein (.1) Potri.008G178300 [exp] 48 / 4e-06 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 44 / 6e-05 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10036964 pacid=23171216 polypeptide=Lus10036964 locus=Lus10036964.g ID=Lus10036964.BGIv1.0 annot-version=v1.0 ATGGGGATTGAGCAAGCCATTGCAGTAGCTGCAGCTGCATTAGCCATTTCTGTTATTGAAGAAGTACAAGAAGAGGCATGGATTCCGGTTCCAGAGCCAA AAAGGACATTGCAGGAAGCAGCATCTCATCAATCCTCTGCCACCAAGAGTCAAGGTATGCAAGGTGGTTTCCAATCAAGTTCTGGATCAATAAGGTATGT GGAAGGGGCCTCATCAGATAGCAATGGAGATGATGGAACAACACCCCGAAAGGTCCTTGTTCCGATTTCTTCGATGGCTAGGACTGATAATCCTGCTGCA GCAGCAATGAAGAAAGATCCAAGCTTTAATGAAACCCCTACTGTTTCATCTATAAAGAAGACACCTTCATTTGTGGATAAAACTGTTCCTAATTCCATGC CAACTTCCACCAAAGCTGGGATTCCATTGAAGAGACCTGAAGCTTCTTCTACTGCAAAACCTGCTGCAACTGGTAAGCCAGCTGGAACCCCAGTATCTTC TTCCCAAGCAGCAGATGCATGGGAGAAAATGCAGCTGGAGAAGCTGAAAGCGAAGTATAAGCAGCAGACTGATCACATCATTTCGTGGGAGGACGGGAGG AAGGCTAAAGCAAGGCGTCGACTCGACAGAGCTGAGAGTGAAATGGAGAGGAGCAGGCTGAGAGCATTGGACAAGTTTCGGGGGGACATGGAGATAGTGA ATAAGATTGCAGGAGGAGCAAAGGCGAAGACAGCTGAGAGGATGAAGAAGGAAGAGGTTAAATTGAAGGAGAAAGCTGATGCTATCAGAAGAACAAGTGG CAAATTCCCAGCAAGAAGGCCTTGTTTATGCATCTGA
AA sequence Show only first row Show all	>Lus10036964 pacid=23171216 polypeptide=Lus10036964 locus=Lus10036964.g ID=Lus10036964.BGIv1.0 annot-version=v1.0 MGIEQAIAVAAAALAISVIEEVQEEAWIPVPEPKRTLQEAASHQSSATKSQGMQGGFQSSSGSIRYVEGASSDSNGDDGTTPRKVLVPISSMARTDNPAA AAMKKDPSFNETPTVSSIKKTPSFVDKTVPNSMPTSTKAGIPLKRPEASSTAKPAATGKPAGTPVSSSQAADAWEKMQLEKLKAKYKQQTDHIISWEDGR KAKARRRLDRAESEMERSRLRALDKFRGDMEIVNKIAGGAKAKTAERMKKEEVKLKEKADAIRRTSGKFPARRPCLCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13920			Remorin family protein (.1)		Lus10036964 [exp]	0	1
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	5.6	0.9305
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	7.7	0.9251
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	8.4	0.9272
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	11.0	0.9211
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	11.1	0.9239
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	12.0	0.9231
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10017204 [exp]	13.4	0.8968
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	15.7	0.9168
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	20.8	0.9164
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10010944 [exp]	22.6	0.8934

Compare expression of checked genes

Lus10036964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.