Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03440 58 / 9e-11 ATNRP1 nodulin-related protein 1 (.1) AT1G13930 53 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161200 [exp] 63 / 4e-13 AT2G03440 94 / 5e-25 nodulin-related protein 1 (.1) Potri.008G093200 [exp] 49 / 6e-08 AT1G13930 57 / 5e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036965 pacid=23170996 polypeptide=Lus10036965 locus=Lus10036965.g ID=Lus10036965.BGIv1.0 annot-version=v1.0 ATGGACGGCCTACTTTCCTCCATCACCAAGGCAGCCGAGTCCAAGCTCCCCGGAGCCACCGGTGGCGACAAGGAAACTGAACACCCCTCAGCACCGACCC CGGCCCCGGCCGGCGACAAGAAGGAAGAGGTAGCGGCGCCGTCGAACGCGGAGCTGATGGCGAGCGCAAAAGTGGTGGCGGCAGCTGCCCAGTCGGCGAT GCAGAGCAAATCGGCCGACGGCATAGACAAGGCCAAGGTGGCCGACGCGGCGGAGGACCTGATCGAGGCCGGCAACAAGTACGGGAAGCTGGACGAGAAG GGCTATGGCCAGTACGTCGACAAGGCGGAGGAATATCTCCGTCAGTACAGCGGCGGTTCGAAGACCGCTGAGGGAGCCGGCAAGCCGGCCGAGGAAGGCG CCGCCGGTAAGGAGGAGAAATCTGAAGGAGGTGGGCTTGGCGGGTATGCTAAGATGGCTGAAGGGTTCTTCAAGTGA
AA sequence Show only first row Show all	>Lus10036965 pacid=23170996 polypeptide=Lus10036965 locus=Lus10036965.g ID=Lus10036965.BGIv1.0 annot-version=v1.0 MDGLLSSITKAAESKLPGATGGDKETEHPSAPTPAPAGDKKEEVAAPSNAELMASAKVVAAAAQSAMQSKSADGIDKAKVADAAEDLIEAGNKYGKLDEK GYGQYVDKAEEYLRQYSGGSKTAEGAGKPAEEGAAGKEEKSEGGGLGGYAKMAEGFFK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13930			unknown protein		Lus10036965 [exp]	0	1
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	3.9	0.8558
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10041500 [exp]	4.9	0.8040
AT1G65720			unknown protein		Lus10020795 [exp]	7.3	0.7700
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	8.1	0.8098
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	12.0	0.7997
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	15.3	0.7961
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	15.3	0.7994
AT2G27180			unknown protein		Lus10008446 [exp]	18.7	0.7783
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	18.9	0.7931
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012445 [exp]	22.2	0.7291

Compare expression of checked genes

Lus10036965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.