Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04290 197 / 6e-60 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G55050 186 / 3e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 185 / 7e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 175 / 4e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 171 / 1e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 171 / 1e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 169 / 3e-49 SGNH hydrolase-type esterase superfamily protein (.1) AT5G18430 168 / 1e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 168 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT4G28780 167 / 4e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037113 [exp] 695 / 0 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 563 / 0 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 265 / 4e-86 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 263 / 3e-85 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 258 / 2e-83 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 258 / 3e-83 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 209 / 4e-64 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 205 / 2e-62 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030409 [exp] 203 / 6e-62 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 281 / 1e-92 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 274 / 3e-89 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 218 / 1e-67 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 183 / 4e-54 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 179 / 5e-53 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102500 [exp] 179 / 1e-52 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.012G068700 [exp] 177 / 4e-52 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 174 / 3e-51 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G076600 [exp] 174 / 9e-51 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 173 / 1e-50 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10036966 pacid=23171079 polypeptide=Lus10036966 locus=Lus10036966.g ID=Lus10036966.BGIv1.0 annot-version=v1.0 ATGGCGACGAAATTCAGGGTTTTGTCGGCAATACTACTTGTTTGCTTCTTGGTTCTCAATATTGATAACAACCACATCTGTGTTTCATGCTCATCGCCGT CAGCTTGTACTTTCCCGGCGGTGTACGTATTTGGGGACTCGATAGTCGATGTCGGGACCAATGATTACTTGCCGGCCAGCACGGCGACCGCTAGCTTCCC GTTTTATGGCATTGATTCTTCTTCTTCTTTGCCCATTGGAAGGTTCAGCAATGGCTTCAATCTTGCTGACCAAATTGGAAAGAAAATGGGGTTCACCGGA AGTCCGCCGCCGTTCCTCTCTCTCGTCGCCGGCGGGGCCTGCAGTAAAAAATTCAACGAAACCATAACGAAGGGCGTCAACTTCGCCTCGGCCGGCTGTG GAATTTTCGACTCGACCGGCTCTACCATCGGAGTGGTTCCTTTGAAAACCCAGATAGAACAATTTACGACGGTAGCCGCAAACCTGTCAGCATTGTTAGG GCCGACAGCAGCCGCCAAGCTGATCGCGGAGTCCGTGTTTCTCATCAGCGTTGGAAGCAACGACATCTTCGATTACCTACGGAATATCTCTTCCTTCCCC GCTGCTCCCAATTTCAACGTCTCCGGCGAGGAGTTGGTCACCTCTTTGATTACGGAATACGGAGGCCATCTTCAGGAATTGTATATAAAAGGAGCAAAGA AGTTCGCCATAGTGATGATTCCGGCACTTGGGTGCTGCCCATTTGCGCGATCGTTCAATGAAACCAGCGGCTGCTTCGATGGAGCGAATTTGCTGGCTCA AGCTTTCTTCGACGGCTTCACTCTGGCATCTAAGAAGCTTGCGGAGTTAGCTCCCGACGTTAAGTTCTCCCTCGGTAACGCCTTCAACATCACTATGGAT TTCATCAGCCACGGTGCCGATTTTGGTTTGAAGGAGGTGGAAGTCCCGTGTTGCGGAGAAGGAAGCGGGGTGTGCAACCAAACATCTACACTTTGTCAGA ATCGAGACGAGCATTTGTTTTGGGATGGCTTCCACCCGACGGAGTTCGTCACCAAATTATCGGCCAATGCGTTTTTCGGGAACGACTCTAGATTCGTATC TCCTATCGGTTTCGGACAGCTTTGA
AA sequence Show only first row Show all	>Lus10036966 pacid=23171079 polypeptide=Lus10036966 locus=Lus10036966.g ID=Lus10036966.BGIv1.0 annot-version=v1.0 MATKFRVLSAILLVCFLVLNIDNNHICVSCSSPSACTFPAVYVFGDSIVDVGTNDYLPASTATASFPFYGIDSSSSLPIGRFSNGFNLADQIGKKMGFTG SPPPFLSLVAGGACSKKFNETITKGVNFASAGCGIFDSTGSTIGVVPLKTQIEQFTTVAANLSALLGPTAAAKLIAESVFLISVGSNDIFDYLRNISSFP AAPNFNVSGEELVTSLITEYGGHLQELYIKGAKKFAIVMIPALGCCPFARSFNETSGCFDGANLLAQAFFDGFTLASKKLAELAPDVKFSLGNAFNITMD FISHGADFGLKEVEVPCCGEGSGVCNQTSTLCQNRDEHLFWDGFHPTEFVTKLSANAFFGNDSRFVSPIGFGQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	0	1
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	1.0	0.9984
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	2.0	0.9932
					Lus10000914 [exp]	2.4	0.9932
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	3.5	0.8989
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10035611 [exp]	4.4	0.7208
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	5.5	0.8417
					Lus10020633 [exp]	5.7	0.7559
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10041807 [exp]	6.3	0.7678
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10033912 [exp]	8.0	0.6743
AT3G22040			Domain of unknown function (DU...		Lus10007506 [exp]	8.9	0.7091

Compare expression of checked genes

Lus10036966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.