Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15280 130 / 5e-33 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT1G07260 129 / 9e-33 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT3G16520 126 / 1e-31 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT3G21750 126 / 2e-31 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT1G78270 125 / 3e-31 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G01420 123 / 2e-30 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT4G01070 121 / 8e-30 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT3G50740 121 / 9e-30 UGT72E1 UDP-glucosyl transferase 72E1 (.1) AT2G29740 121 / 1e-29 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT4G15260 118 / 2e-29 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036969 [exp] 521 / 0 AT1G78270 190 / 3e-53 UDP-glucosyl transferase 85A4 (.1) Lus10037117 [exp] 443 / 2e-154 AT1G78270 143 / 2e-38 UDP-glucosyl transferase 85A4 (.1) Lus10037115 [exp] 359 / 5e-124 AT1G01390 59 / 2e-10 UDP-Glycosyltransferase superfamily protein (.1) Lus10037114 [exp] 272 / 7e-90 AT1G07260 103 / 6e-26 UDP-glucosyl transferase 71C3 (.1) Lus10039301 [exp] 175 / 3e-49 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 148 / 2e-39 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10026795 [exp] 134 / 4e-34 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10024037 [exp] 134 / 4e-34 AT2G18570 412 / 3e-140 UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 131 / 3e-33 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089000 [exp] 326 / 2e-107 AT3G16520 174 / 3e-49 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G126000 [exp] 319 / 2e-104 AT3G16520 192 / 9e-56 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 145 / 3e-38 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 144 / 8e-38 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 144 / 9e-38 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 143 / 1e-37 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 143 / 2e-37 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027800 [exp] 141 / 6e-37 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 140 / 2e-36 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.016G014350 [exp] 138 / 6e-36 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10036967 pacid=23171108 polypeptide=Lus10036967 locus=Lus10036967.g ID=Lus10036967.BGIv1.0 annot-version=v1.0 ATGTCAACAACAACCACCGCCGATTCCCTCCATCGCCGGCCCTCTCCCCACGTCGCCCTACTCCCAAGCTCTGGCGCCGGCCACCTCATGCCATTCCTCC GCCTAGCCGCAAACTTACTGAGTCAAGACTGCCACGTCACCCTAATCACCAGCCACCCAATCGTATCTCAGGCAGAGTCATCACTAATCTCCAAATTCCT CGCCGCTTACCCACAAGTCTCCGAGCAGCAATTCCACATCCTCCCGATAGACCCGTCCACCGCCAACTCCACCGACCCCTTTTGCCTCCAGTGGGAAGCC ATTCGCCGATCCCTCCCAAACTTATCTTCCATCCTCTCTTCCCTTTCCCCGCCGCCAGCTGCTCTGTTCTCCGACGTATCCTTACTCTCCTCCACCATCT CCGTCACCCAACCTCTCAACATCCCTAACTACATCCTCTACGTGTCCTCGGCCAGAATGTTCTCTTTTCTCTCCCATTACCCTAGTTTATCCAAAACCCA ACTCGAATCCGCCGGGAAATTCGAAGTCCCCGGAATTGGAGACGTGCCGAGATCGTCGGTCCCGCCGGTGCTTCTGAACCCGGAGACTCTGTTCTCCAGC TTGTTCAAATCCAGCGGCGAGTGCCTCTCCAAATTCGACGGAGTGGTGATAAACTCGTTTGACTGCCTGGAATCTGAAGCTCTGAAAGCGATCAGAACAG GGGAAGTAGATGACCGTTTACCTCCTCTGTTCAACATCGGACTGATCCCCCATGGGTTCGAGACCAAGTTAGAAAGAGGCTCAGGAACAGAAATGGCGTT GAAGTGGTTAGAAGGGAAGCCAGCGAAATCCGTTGTGTACGTGAGCTTCGGGAGCAGGACGACTCTGCCAAGAGACCAGATCAAGGAGTTGGGAAAAGGG CTGATCCGGTCAGGGGTTCATTTCGTCTGGGTGGTGAAGGACAAAGTGGTGGACCAAAACGACAAAGAGGCGTTGGAAGATGTTTTGGGAGAGGAGATGA CGGAGGAGGTTGGGAAGAGAGGGGTGGTGGTGAAGGAGTGGGTGGATCAAGCCGAAGTGATTGGGCACGAATCGGTGGGAGGGTTTTTGAGCCATTGCGG GTGGAACTCTGTGGTGGAATCTGCGTGGTTTGGTGTTCCTATGATGGGGTGGCCGCCTGGTGGAGATCAGATGGTCAATGGGGAGGTGGTGGAGAGGTGT GGGCTAGGGTTTATGGGTGGGGAATGGGGTTGGATGGGAGATTTCTTGGTGAAGGGGGAAGAGATTGGGGAGAGGATTAAGGTGTTGATGGAGGATGTGA AGCTGAGGAAGGTTGCTGGGGAGATTAAGGAACAGGTTAGGAAGGATGTTGGCGAGGGTGTGAGTTTGAAACAGCTGGTTAACAAGTTGAGCTGTTGA
AA sequence Show only first row Show all	>Lus10036967 pacid=23171108 polypeptide=Lus10036967 locus=Lus10036967.g ID=Lus10036967.BGIv1.0 annot-version=v1.0 MSTTTTADSLHRRPSPHVALLPSSGAGHLMPFLRLAANLLSQDCHVTLITSHPIVSQAESSLISKFLAAYPQVSEQQFHILPIDPSTANSTDPFCLQWEA IRRSLPNLSSILSSLSPPPAALFSDVSLLSSTISVTQPLNIPNYILYVSSARMFSFLSHYPSLSKTQLESAGKFEVPGIGDVPRSSVPPVLLNPETLFSS LFKSSGECLSKFDGVVINSFDCLESEALKAIRTGEVDDRLPPLFNIGLIPHGFETKLERGSGTEMALKWLEGKPAKSVVYVSFGSRTTLPRDQIKELGKG LIRSGVHFVWVVKDKVVDQNDKEALEDVLGEEMTEEVGKRGVVVKEWVDQAEVIGHESVGGFLSHCGWNSVVESAWFGVPMMGWPPGGDQMVNGEVVERC GLGFMGGEWGWMGDFLVKGEEIGERIKVLMEDVKLRKVAGEIKEQVRKDVGEGVSLKQLVNKLSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10036967 [exp]	0	1
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	7.1	0.9108
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	9.5	0.8688
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	11.0	0.9097
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	14.3	0.8966
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	16.7	0.8593
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	20.7	0.8864
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	23.3	0.8797
AT5G62840			Phosphoglycerate mutase family...		Lus10007865 [exp]	24.2	0.8775
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	31.6	0.8776
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	31.7	0.8739

Compare expression of checked genes

Lus10036967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.