Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78270 175 / 6e-48 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G16520 163 / 5e-44 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT4G15280 151 / 2e-39 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21790 150 / 5e-39 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 149 / 7e-39 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT1G01390 149 / 8e-39 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 146 / 1e-37 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT3G21800 145 / 2e-37 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G05675 144 / 3e-37 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 144 / 6e-37 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037117 [exp] 631 / 0 AT1G78270 143 / 2e-38 UDP-glucosyl transferase 85A4 (.1) Lus10036967 [exp] 512 / 1e-177 AT4G01070 172 / 3e-48 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10037115 [exp] 242 / 2e-76 AT1G01390 59 / 2e-10 UDP-Glycosyltransferase superfamily protein (.1) Lus10000645 [exp] 261 / 4e-75 AT1G26330 333 / 5e-96 DNA binding (.1.2) Lus10037114 [exp] 188 / 8e-56 AT1G07260 103 / 6e-26 UDP-glucosyl transferase 71C3 (.1) Lus10039301 [exp] 189 / 3e-53 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10026795 [exp] 179 / 2e-49 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10039302 [exp] 177 / 7e-49 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 174 / 1e-47 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126000 [exp] 348 / 1e-113 AT3G16520 192 / 9e-56 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G089000 [exp] 345 / 1e-112 AT3G16520 174 / 3e-49 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 188 / 9e-53 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 184 / 2e-51 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 181 / 3e-50 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 180 / 1e-49 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 179 / 1e-49 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150000 [exp] 176 / 2e-48 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.007G030500 [exp] 175 / 5e-48 AT2G18570 494 / 8e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G035800 [exp] 172 / 5e-47 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10036969 pacid=23171057 polypeptide=Lus10036969 locus=Lus10036969.g ID=Lus10036969.BGIv1.0 annot-version=v1.0 ATGACAACCTCCGACGACCACCGCCCCCACGTAGCCCTTCTCCCAAGCTCCGGCGCCGGCCACCTCATGCCATTCCTCCGTCTAGCAGCAACCTTACTCG CCAAAAATGTCCGAGTCACCTTAATCACCAGCCACCCAATCGTCACCGATGCTGAGTCATCTCTGATTTCCCATTTCCTCGCCGCCTTCCCACAAGTCTC GGAGCAGCAATTCCACATCCTCCCCATAGACCCATCCACCGCCAACTCCACCGACCCATTCTTCCTCCAGTGGGAATCCATCCGCCGCTCCCTCCACCTC CTCTCCTCCATCCTCTCTTCCCTGTCCCCGCCGCCGGCAGCCATGGTCTCCGACATAACCTTAATCTCCTCCACCATCTCCGTCTCCCAGGAGCTTCAAA TCCCCAACTACGTTCTCTTCACTTCCTCCGCCAGAATGCTATCTTTGGTAACCCGTTACCCTGCCTTCACCAAAACCCAGATCGAATCCGCCGACAAGTT CGAAATCTCGGGAATCGGAGACTTACCCAGATCGTCGATCCCGCCGTTGCTTCTAAAGCCGGAGTCTTTATTCGCAACCATGTTCAAATCTAACAGCGAG AATCTCCGCAAGTTCGACGGAATCCTGATCAACACGTTTGACAGGCTGGAATCTAAAGCTCTGTCAGCGATCAGGAAAGGGGAAGTTGCAGATGGGTTGC CGCATTTGTTCAATGTCGGATTGATTCCTCACGATTTCGAGAGGAAATTAGGAGTCGGAGGAAGGAGGACGGGAGAGGTGATGAAATGGTTGGATGGGAA GGAGGCGAATTCGGTGGTGTATGTGAGCTTTGGAAGCAGGACGGCTCTGTCGAGAGATCAGATTAAGGAGCTGGGGAAAGGGTTGGTTGAGTCAGGGTTT GGGTTTGTTTGGGTGATGAAGGATAAAGTGGTGGACAAGGAAGATGGGGAGAGATTGGAGGATGTTTTGGGAGAGGAGATGATGAAGGAGGTTGGGGAAA GAGGGTTAGTGGTGAAGGAATGGGTGGATCAAGTTGAAGTGATTGGGCATGATTCGGTTGGTGGGTTTGTGAGCCATTGTGGGTGGAACTCTGTGGTGGA AGCTGCATGGGCTGGGGTGCCTGTGCTAGCTTGGCCGCTTCATGGAGATCAGAGGATCAATGGGGAAGTGGTGGAAGGGTGTGGGTTGGGGTTTGTGGGT GGGGGGAATTGGGGGTTGGGTTTGGTTAAGGGGGAGGAGATTGGGGTTAGGATTAAGGAGTTGATGGGTGCTGAGAAGAAGGTGAGGGAATTGGCTAAGG AGATTAGGGTTGAGGTTAGGGGTGATGTTGGGGTTGGTGGGAGCACTTCAAAGGAGGAGCACACTATATCAAACACGGGTTACTATTCTCCTCGAATTGT GGAGTTAAAGAGGATTCCTAAACCTGAATCTCTAGTTCTAGGCCACGATGGCTTTGAGGAATTTACACTATGGAACTTCAATCCATGCGTTCAACCCTAT CAGCTGGTTCAGCTGGCAACCACAGCTCACTGCCCAGAGGACCGTACCAGCAGAATGATGGAAGCCACAAAATCATCATTAACAGATCGTCCGTTCCCTC ACAATGAAGGTGAAGATATCGCCATCTGGCTTCTCGTCTCAACCAACAACGCAACCGACCGTCCAACAGATGATCCAGTGGTATCCTGGAGGCTGGCTCT AATGGCCCAAAATACCATGATCCTCGGACCCACGTTGGATCCAGGGGCAGTAGCTGTCGGCGCAATAGTTGGCCGTGGAGTCATTGCCACTGACGATGGA GTTGTGAGCATGTGGGACTTGTTGACAGGGAACAGACTCGGCAGTCTCCATCATTTCAAAGGTAAGCTTTTGGTCGGTTGA
AA sequence Show only first row Show all	>Lus10036969 pacid=23171057 polypeptide=Lus10036969 locus=Lus10036969.g ID=Lus10036969.BGIv1.0 annot-version=v1.0 MTTSDDHRPHVALLPSSGAGHLMPFLRLAATLLAKNVRVTLITSHPIVTDAESSLISHFLAAFPQVSEQQFHILPIDPSTANSTDPFFLQWESIRRSLHL LSSILSSLSPPPAAMVSDITLISSTISVSQELQIPNYVLFTSSARMLSLVTRYPAFTKTQIESADKFEISGIGDLPRSSIPPLLLKPESLFATMFKSNSE NLRKFDGILINTFDRLESKALSAIRKGEVADGLPHLFNVGLIPHDFERKLGVGGRRTGEVMKWLDGKEANSVVYVSFGSRTALSRDQIKELGKGLVESGF GFVWVMKDKVVDKEDGERLEDVLGEEMMKEVGERGLVVKEWVDQVEVIGHDSVGGFVSHCGWNSVVEAAWAGVPVLAWPLHGDQRINGEVVEGCGLGFVG GGNWGLGLVKGEEIGVRIKELMGAEKKVRELAKEIRVEVRGDVGVGGSTSKEEHTISNTGYYSPRIVELKRIPKPESLVLGHDGFEEFTLWNFNPCVQPY QLVQLATTAHCPEDRTSRMMEATKSSLTDRPFPHNEGEDIAIWLLVSTNNATDRPTDDPVVSWRLALMAQNTMILGPTLDPGAVAVGAIVGRGVIATDDG VVSMWDLLTGNRLGSLHHFKGKLLVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	0	1
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	1.0	0.9028
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	1.7	0.8565
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	4.5	0.8626
AT3G09950			unknown protein		Lus10038794 [exp]	5.5	0.8241
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	5.7	0.8416
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	10.8	0.7948
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	11.5	0.8077
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	11.6	0.7810
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	13.9	0.8127
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	16.9	0.7898

Compare expression of checked genes

Lus10036969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.