Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024335 [exp] 192 / 5e-63 AT1G75720 117 / 8e-33 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023000 [exp] 58 / 1e-10 AT1G75720 108 / 2e-29 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G238500 [exp] 55 / 2e-09 AT1G75720 82 / 3e-19 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) Potri.005G114400 [exp] 39 / 0.0004 AT2G17940 111 / 2e-30 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10036971 pacid=23171159 polypeptide=Lus10036971 locus=Lus10036971.g ID=Lus10036971.BGIv1.0 annot-version=v1.0 ATGCAGCAGGTTGGTCGTAATGGAAAGCTAGACACAATGACATGTCAGCTGGAAGAAACAAAACAGAGCCTGGAAAAGGCAAAGGAGGAAAGCACACAAA TGGCGAGCTGCCTCTCCCATCTTAAACAAGAGCTTGAACAAACAAAGCAAGAGCTCCAAAGACTCAAACAGGTGAAGGAAGTCCAGATGAAGCAATCGAC CATCTCGATTGACCCGCAATCCGACATCCACCATGGCCAACAAGACGTGAAACTAGTGACGGTACCAGATGAAGATGTGGAGTTTCAGAAGAAGAGGTAC GTGACATTTGCTAATAATGAAGGAGTATTTGATAATGATCGGAGGCTGGAGAGACATCCTTCTTTGAGAAAGAAGAAGAAGAAGCCGTTGATTCCTTTGA TTATTGGAGGACTCTTCTCCTCTTCTAAGAGAAAGGGACACCATCACCACCACCATGAAATTGCTTAA
AA sequence Show only first row Show all	>Lus10036971 pacid=23171159 polypeptide=Lus10036971 locus=Lus10036971.g ID=Lus10036971.BGIv1.0 annot-version=v1.0 MQQVGRNGKLDTMTCQLEETKQSLEKAKEESTQMASCLSHLKQELEQTKQELQRLKQVKEVQMKQSTISIDPQSDIHHGQQDVKLVTVPDEDVEFQKKRY VTFANNEGVFDNDRRLERHPSLRKKKKKPLIPLIIGGLFSSSKRKGHHHHHHEIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	0	1
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Lus10035654 [exp]	2.0	0.9573
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	4.6	0.9509
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	4.6	0.9426
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	5.3	0.9521
AT1G68180			RING/U-box superfamily protein...		Lus10001611 [exp]	7.5	0.9298
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	8.7	0.9460
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	8.7	0.9260
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	9.2	0.9351
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	9.6	0.9476
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	9.9	0.9371

Compare expression of checked genes

Lus10036971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.