Plant FIBer expression Database

Lus10036972 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73970 599 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000648
[exp]
1256 / 0 AT1G73970 701 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G016000
[exp]
811 / 0 AT1G73970 697 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10036972 pacid=23171218 polypeptide=Lus10036972 locus=Lus10036972.g ID=Lus10036972.BGIv1.0 annot-version=v1.0
ATGAAGTCCTCTAGACCATCTTCTATGGTAATAGATTCAGCTGCAGAGGTCTTGTCCAAGTTTGTGGCGAGCGAATATGGAGCTACAAAGGACTCGGTGT
TATTTTCGTATACAATTCTTCTTCTAGGTGCCCTTTCATATGTGACCTCTGCATCGGAACGTTCTAAAACAGTATGTCTAGATTTGGTTTCGAGACTGTT
GGAGGAAGACTATAGACTGGCTCGTTCAGTTGAAGTGTTTCTTGCCGGGATCGGGTATGCCTTGTGTTCTTCCGTGAATGTACACTATCATAGGGTTTTG
GATTCGTTAATGGGGATTTGGGGAAAGGAAGACGGACCGTGTAGTAGCTTAACAAACGGTCTCATGATTTTGCATTTGGTAGAATGGGTTATACCTGGTA
TCATGAAATTAGGTTCTCAGGAAAAGCTAGAAACTTTTACAAAAGAGGTTCTCGAAACCCGAAAACCAGACTATCCACCATTTTCCCTTATTATGGCTGC
AGGAGGTGTTCTCAGAGCATTAAATAGATCGGTTCCGATTGGTCAACGGTTGGATTTGGTTTCCAGATTGAGGGCTTCTTCAGAATATATGCTAGAATCC
ATCGCACAGAAATTAAACGCTAAGGTCAATGATGGTTCAACCAGTCTTCTATTCCAGTGTGTTTCTTTAGCTTTAGCTCGAGCTGGCTCAGTATCTTCCC
GAGTTCCTCTGCTACTGTCTCTTGCTACAGCATTACTGACCGAGATATTCCCTTTGCGAGGTTTTTACACGAGAATTGTTGCTTCAGTCAGTTCACCACT
ACTGGAGTTCGACGAAGTAAACAATCACCTGAATAGTGTTCTTTTCAAAGAAGCAGGGGCCGTAAGTGCTGTTTTCTGCAACCAGTATGTCTCAGCAGAT
GAAGAGGGCAAGAACATCGTTGAGAATGCGGTTTGGCGCTTCTGCCAAGAGATATATTCAGGCCATCGGCGGGCAGCTTTATTGCTTCGTGGTAGAGAAG
ATCCGTTGCTTGCGAATATTGAGAAAATTGCTGAGTCTTCCTTCCTTATGGTTGTTGTTTTTGCCTTGACTGTTAGTAAGCACAAGTTGAGCTCAAGCTT
CTCCCTCGAAACTCTGATGAAGACATCAGTATCGATATTAGTCTCGTTCTCTTGCATGGAGTACTTTCGTCGTATTCGCTTACCTGAGTATATGGACACG
ATACGAGGTGTCGTTGTAAGTGTACAGGAGAATGAGGCTGCTTGCAGCTCTTTCGTGGAATCCATGCCTTGTTATGCTGATCTGACAAACCCTAAAGATT
TCCATCAGCAAGTGCAATATACTTGGTTGAAGGATGAAGTGCAGACTTCCAGGATATTGTTTTACCTGCGCGTTATTCCTACGTGCATCGAGCGCCTTCC
TGCAGATCTATTCAGCAACGTGGTGGCTCCAACTATGTTCTTATATATGGAACATCCACATGGGCAGATAGCTCGAGCCTCGCATTCTATGTTCGTGGCA
TTCGTTTCTTTGGGTAAGGAGTCGGATGGTGGCGAAACAGTATCATTGAAGGAGCAACTTGCTTTTTACTATGTGCAGAAATCTCTCTCAGACTATCCGG
GCTCTACTCCTTTCGACGGTATGGCATCTGGGTTCGCACATTTGATCCAGAATCTCCCAGCAGGAAGCCCAGCCATATTCTACTGCATCCACAGCATCGT
CGAAAAGGCACAGAACCTCTGTTCGAACGTCTCCATGGAAAATGCTGATTCCTGGAAGAACTGGCAAGGAGAGTTGGAGCCTTGCAAGAAGGTTTTCGAT
ATGCTTCTTCGATTCGTTTCCCTCGTCGATATTCAAGTGCTACCTTACCTGATGAAGCAACTGGCGCAGCTGATCATCCAGCTACCTAAAGATGGCCAAA
ACACGATCCTTGACGAGCTATATGAACATGTCGCTGAATCTGATGACGTGATTCGCAAGCCTTCACTGGTCTCTTGGATGCAATCACTTTCTTACATATG
CTCTCAAGATAGCAGTAACAATCGAACTGCAGCATCCAAAGAGATTGAACTAAGCTCCCGACTATAG
AA sequence
>Lus10036972 pacid=23171218 polypeptide=Lus10036972 locus=Lus10036972.g ID=Lus10036972.BGIv1.0 annot-version=v1.0
MKSSRPSSMVIDSAAEVLSKFVASEYGATKDSVLFSYTILLLGALSYVTSASERSKTVCLDLVSRLLEEDYRLARSVEVFLAGIGYALCSSVNVHYHRVL
DSLMGIWGKEDGPCSSLTNGLMILHLVEWVIPGIMKLGSQEKLETFTKEVLETRKPDYPPFSLIMAAGGVLRALNRSVPIGQRLDLVSRLRASSEYMLES
IAQKLNAKVNDGSTSLLFQCVSLALARAGSVSSRVPLLLSLATALLTEIFPLRGFYTRIVASVSSPLLEFDEVNNHLNSVLFKEAGAVSAVFCNQYVSAD
EEGKNIVENAVWRFCQEIYSGHRRAALLLRGREDPLLANIEKIAESSFLMVVVFALTVSKHKLSSSFSLETLMKTSVSILVSFSCMEYFRRIRLPEYMDT
IRGVVVSVQENEAACSSFVESMPCYADLTNPKDFHQQVQYTWLKDEVQTSRILFYLRVIPTCIERLPADLFSNVVAPTMFLYMEHPHGQIARASHSMFVA
FVSLGKESDGGETVSLKEQLAFYYVQKSLSDYPGSTPFDGMASGFAHLIQNLPAGSPAIFYCIHSIVEKAQNLCSNVSMENADSWKNWQGELEPCKKVFD
MLLRFVSLVDIQVLPYLMKQLAQLIIQLPKDGQNTILDELYEHVAESDDVIRKPSLVSWMQSLSYICSQDSSNNRTAASKEIELSSRL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73970 unknown protein Lus10036972
[exp]
0 1
AT1G16480 Tetratricopeptide repeat (TPR)... Lus10033685
[exp]
2.8 0.8832
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Lus10020235
[exp]
5.1 0.8674
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Lus10022174
[exp]
5.3 0.8422
AT2G31530 EMB2289, SCY2 SECY HOMOLOG 2, EMBRYO DEFECTI... Lus10014663
[exp]
7.5 0.8654
AT1G04160 XI-B, XI-8, ATX... MYOSIN XI-8, ARABIDOPSIS THALI... Lus10009791
[exp]
9.6 0.8659
AT3G57170 N-acetylglucosaminyl transfera... Lus10033869
[exp]
10.1 0.8459
AT1G04210 Leucine-rich repeat protein ki... Lus10021898
[exp]
12.0 0.8369
AT1G76510 ARID ARID/BRIGHT DNA-binding domain... Lus10016045
[exp]
12.4 0.8341
AT1G78930 Mitochondrial transcription te... Lus10035714
[exp]
14.5 0.7884
AT3G07530 unknown protein Lus10011289
[exp]
14.7 0.7993

Lus10036972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.