Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26340 176 / 5e-58 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G32720 120 / 1e-35 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 116 / 3e-34 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT5G53560 115 / 7e-34 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G46650 103 / 2e-29 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 84 / 1e-19 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 82 / 5e-19 GNR1, NIA1 nitrate reductase 1 (.1) AT1G60660 74 / 7e-18 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT3G61580 61 / 8e-12 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G09680 59 / 2e-11 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000651 [exp] 237 / 6e-82 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10008838 [exp] 112 / 2e-32 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 109 / 1e-31 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10032612 [exp] 105 / 6e-30 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10043137 [exp] 105 / 6e-30 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 105 / 9e-30 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10010111 [exp] 103 / 3e-29 AT2G32720 137 / 8e-43 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10011858 [exp] 103 / 3e-29 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10030219 [exp] 102 / 8e-29 AT5G53560 151 / 4e-48 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G156900 [exp] 169 / 2e-55 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.002G242500 [exp] 115 / 4e-34 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 114 / 1e-33 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.015G007600 [exp] 112 / 8e-33 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.017G054300 [exp] 105 / 4e-30 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 104 / 1e-29 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.014G019200 [exp] 85 / 8e-22 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.002G088600 [exp] 76 / 1e-16 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.018G087600 [exp] 70 / 2e-16 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Potri.005G172400 [exp] 74 / 4e-16 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10036973 pacid=23171021 polypeptide=Lus10036973 locus=Lus10036973.g ID=Lus10036973.BGIv1.0 annot-version=v1.0 ATGCCGGAGCTCACAAAGCTGCACTCGATGCAGGAAGCTTCCGAGCACAACTCCAAGGACGATTGCTGGATCGTCATCGACGGAAAGGTTTACGATGTGA GTTCATACCTAGATGATCACCCAGGAGGAGACGATGTTCTCCTTCAAGCAACAGGGAAAGATGCAACCGATGATTTTGAAGATGCGGGGCATAGCCAGGA CGCAAGGAATGAGCTGAAAACCTTCTTCATTGGTGAGCTAGACACAACGACCACACCAGCCATCCCGGAGCTCAAGATCATTTCCAAGAATGAAAAGTCG GATTCCGTGAAGAAGCTTAAGGACTTGACAAGACAGTACTGGGCTGTACCTGTAGCAGTCGTAGGAATCTCTGTGGTGGTTGGCGGCATCATCGTGTACC TTCGTAAGAAGTAG
AA sequence Show only first row Show all	>Lus10036973 pacid=23171021 polypeptide=Lus10036973 locus=Lus10036973.g ID=Lus10036973.BGIv1.0 annot-version=v1.0 MPELTKLHSMQEASEHNSKDDCWIVIDGKVYDVSSYLDDHPGGDDVLLQATGKDATDDFEDAGHSQDARNELKTFFIGELDTTTTPAIPELKIISKNEKS DSVKKLKDLTRQYWAVPVAVVGISVVVGGIIVYLRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10036973 [exp]	0	1
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10020499 [exp]	8.6	0.8986
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10012113 [exp]	12.0	0.8665
AT1G11240			unknown protein		Lus10011247 [exp]	13.3	0.8725
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10022882 [exp]	16.1	0.8732
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	17.3	0.8900
AT1G65270			unknown protein		Lus10026847 [exp]	18.6	0.8564
AT1G16740			Ribosomal protein L20 (.1)		Lus10033326 [exp]	23.7	0.8332
AT1G42960			unknown protein		Lus10012242 [exp]	26.1	0.8793
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	31.3	0.8658
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	32.6	0.8752

Compare expression of checked genes

Lus10036973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.