Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01750 273 / 4e-84 Ankyrin repeat family protein (.1) AT3G04140 249 / 4e-75 Ankyrin repeat family protein (.1) AT2G31820 81 / 4e-16 Ankyrin repeat family protein (.1) AT5G60070 78 / 4e-15 ankyrin repeat family protein (.1) AT4G03480 77 / 1e-14 Ankyrin repeat family protein (.1) AT1G07710 71 / 6e-13 Ankyrin repeat family protein (.1) AT1G05640 70 / 1e-12 Ankyrin repeat family protein (.1) AT3G09550 69 / 5e-12 Ankyrin repeat family protein (.1) AT3G12360 68 / 5e-12 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 66 / 2e-11 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022330 [exp] 302 / 1e-94 AT3G01750 633 / 0.0 Ankyrin repeat family protein (.1) Lus10041582 [exp] 296 / 3e-92 AT3G01750 635 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 83 / 2e-16 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 71 / 6e-13 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 71 / 1e-12 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 66 / 3e-11 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 66 / 3e-11 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 66 / 4e-11 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 66 / 4e-11 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179100 [exp] 458 / 1e-155 AT3G01750 579 / 0.0 Ankyrin repeat family protein (.1) Potri.010G055700 [exp] 400 / 2e-133 AT3G01750 514 / 1e-175 Ankyrin repeat family protein (.1) Potri.001G335400 [exp] 371 / 1e-121 AT3G01750 701 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 89 / 2e-18 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 84 / 7e-17 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 75 / 4e-14 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 75 / 5e-14 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 73 / 1e-13 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 72 / 2e-13 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 71 / 6e-13 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10036974 pacid=23171095 polypeptide=Lus10036974 locus=Lus10036974.g ID=Lus10036974.BGIv1.0 annot-version=v1.0 ATGCTGTACGCCGCCGCGAGGAGTAAGGACTGTGAGGTTTTCAGGGTTCTGCTACGGAGCGCCACTTCGCCGCCGGGGAAGGAATTGAAGGAGAATGATC AATCAGAGTTTGAGAAGGAGATTGTGAATCGAGCTGTCCATGGTGCTGCTAGAGGCGGGAATCTGGAGATTTTGAAGGAGCTGCTTGTGGATTGTTCTGA TGTTTTAGTGTTCAGAGATGAACAGGGTTCTACAGTGCTGCATTCTGCTGCTGGTAGAGGCCAAGTTGAGGTGGTTAAGGATCTGATAGCATCATACCAT ATCGTCACTTCGATCGACAATAACTCGAACTCGGCCCTTCATATCGCAGCATACAGAGGTCACTTACCAGTAGTCAAGGCTCTACTCCAAGAATGTCCAT CTCTGAGCTCGTTAACAAACGTCTACGGAGACACATTCCTCCACATGGCGGTTTCGGGCTTCAGAACTCCCGGTTTTCGTCGAATGGACAAGCAGATCGA GCTCATGAACCAGATACTCTCCTCCGATATCATCAACATTGAAGAGATCATCAATTTGAAGAACAACGACGGAAGAACAGCTCTCCACATTGCTGTGATC GAGAACATCCAGTCGAATTTAGTCGAGCTTCTCATGACCGCGCCATCCATAAACTTGAACATCAAGGATTCGGAGGGTATGACTCCGTTGGATTACTTGC GGCAGAAGCCCAGATCGGCAGCTTCCGAGATTTTGATCAACCAGCTGGTTTCGGCTGGAGGGCTCTCGAGTAGGCAGTACATTGTTTCGAAACTGCAAGG GGGAGGTCATGGCATAGGGATGAGCCCTGGTACCTCTTTTCGAATTTCGGATGGCGAGATATTCTTGCATACTGGTGTTGAGTATGTCTCCGATGTTAGC CGAGAGCTGGGGAGCGCGGATTACAGTGAACAGGCGAGCTTCGAGAATTCGGAGAAGAAGGCATCACCCAGTAAAGTAGCTTCCGCGGCAAGCAAGTTGA AGTCTTTACTCCAATGGCCTAGGAAAAAAGCTAAAGATCGTAGCGTTCGAAGCACTGCCACAGACGATGAGTCTATAGACTCGTTCCATCTCTGCAGAAA CTTCGAAGAGTGTCCACCTCCATTGAGGAAACGATACTCTAAGCTTTCCTCTTTTTGTCCGGTTAGTGGAACGGCTCTTCCAAGTCCTTTAACAAGAAGG AAATTTGCCGCAGAGTTGATGCATGGAGTCATACATGCAAAGCCGAGTTTCTCTGGTCCAATACAATCGACTTACAGCCCTTTATCCTCGTTCTCTTACA TCTCTTCGCCAGCTTCATCGAATCAAGACCAGATTGTCGGCGAATCGCCAGCATCATCCAAGTTCAGGGCGGGTCATAAGAGGCAGACATCACTCAACAC GAAGCTGATGAACAAGTACTTGTGCTTTGGTGCACAAGGTTTAGTGGTGGATGGCTCGACAAAAGATTCAAAGGCTGTGAGAAAGAACTACAGACGCGCC TCTTCGTTAGCCGCCTGA
AA sequence Show only first row Show all	>Lus10036974 pacid=23171095 polypeptide=Lus10036974 locus=Lus10036974.g ID=Lus10036974.BGIv1.0 annot-version=v1.0 MLYAAARSKDCEVFRVLLRSATSPPGKELKENDQSEFEKEIVNRAVHGAARGGNLEILKELLVDCSDVLVFRDEQGSTVLHSAAGRGQVEVVKDLIASYH IVTSIDNNSNSALHIAAYRGHLPVVKALLQECPSLSSLTNVYGDTFLHMAVSGFRTPGFRRMDKQIELMNQILSSDIINIEEIINLKNNDGRTALHIAVI ENIQSNLVELLMTAPSINLNIKDSEGMTPLDYLRQKPRSAASEILINQLVSAGGLSSRQYIVSKLQGGGHGIGMSPGTSFRISDGEIFLHTGVEYVSDVS RELGSADYSEQASFENSEKKASPSKVASAASKLKSLLQWPRKKAKDRSVRSTATDDESIDSFHLCRNFEECPPPLRKRYSKLSSFCPVSGTALPSPLTRR KFAAELMHGVIHAKPSFSGPIQSTYSPLSSFSYISSPASSNQDQIVGESPASSKFRAGHKRQTSLNTKLMNKYLCFGAQGLVVDGSTKDSKAVRKNYRRA SSLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	0	1
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10001977 [exp]	2.0	0.9121
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	2.8	0.8872
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	3.5	0.9137
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	3.9	0.8914
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	4.2	0.8871
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	5.7	0.8925
AT5G67350			unknown protein		Lus10010401 [exp]	7.3	0.8876
AT4G39110			Malectin/receptor-like protein...		Lus10028805 [exp]	7.6	0.8621
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10041002 [exp]	8.7	0.8974
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	9.8	0.8745

Compare expression of checked genes

Lus10036974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.