Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04130 473 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G22670 254 / 2e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 166 / 9e-47 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 159 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 157 / 2e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16710 155 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 155 / 5e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G26800 151 / 5e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 153 / 9e-42 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 154 / 1e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015827 [exp] 757 / 0 AT3G04130 535 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041193 [exp] 273 / 2e-86 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042307 [exp] 167 / 2e-46 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011459 [exp] 159 / 2e-43 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042362 [exp] 153 / 2e-41 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 152 / 2e-40 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 151 / 3e-40 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 149 / 5e-40 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 149 / 5e-40 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G055500 [exp] 521 / 0 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G084000 [exp] 261 / 8e-82 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G179201 [exp] 235 / 8e-76 AT3G04130 231 / 3e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G083800 [exp] 240 / 5e-74 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083900 [exp] 229 / 2e-69 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 185 / 2e-53 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 181 / 3e-52 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 168 / 4e-47 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 165 / 4e-45 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 164 / 5e-45 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036975 pacid=23171091 polypeptide=Lus10036975 locus=Lus10036975.g ID=Lus10036975.BGIv1.0 annot-version=v1.0 ATGGGCCGAGTCATCGAATCCGGACTACTGTCACCCCCCGAGGCTTACGATTCGGTTGTGGATATATTGGGCAAGATGAGGCAGATGGAACAGATGAATG CCTTCTTACACGAAATGAATCGAGATAATCTTGTAACGCTCAAGACGCTGGGGAAGGCTATGAGGAGGTACACCGGTGCAGGGCAGTGGGAGGATGCCGT TAGGCTGTTCGATAAGTTGGAGACTTTCGGGCTGAGGAAGAGTACCGAGTCGATGAATTTATTGCTTGATACACTTTGTAAAGAGCGACGAGTTGAGAAA GCTCGCGAGATTTTCTTGGAGCTGAAGGCACACATTCCGTCCAATGCCAACACGTATAATATCTTCATACACGGTTGGTGTAAGATCAACCGGGTCGAGG AGGCTTACTGGACGTTACAAGAGATGAAAGGCTGCGGGGTTAAGCCTTGTGTGTTAAGTTACTCCACCATCGTCCAGTTCCATTGCCAGCAGGGGAAGTT CGGCGAGGTGTATAGCGCTCTTGATGAGATGGAAGAACAAGGATCTCCAGCTAATGTTGTTACTTATACGACAATACTGTGTCATTTGACGAAATCGGAG GATTATGATCGAGGTTTGGAGATAGTGGAGAGGATGAAATCGGCTGGGTGTAGACCCGATACGTTGTTCTACAACGCATTGATTCATATGCTCGGAAGAT CTGGGAAAGTGGAGGAGGCGGTTCGTGTTTTCGCTGTAGAGATGGCGAGGGTGGGTGTGGTGCCGAATACATCGACTTATAACTCAATGGTTGCGATGTT TTGTCATCAAGGTCAACCATCAAGGGGTTTCGATCTTCTCAAGGAGATGGAAAGTTCGATGATGTGTAAGCCTGATGTTCATACGTACTGTCCGTTGCTT CAGTCGTGCTTGAAGAGTTGGAAGGTGGATGGTTTATTGAGACAGTTGTTGGATGATATGGCGAACAAGCATCATCTCAGTCTCGATATGTTGGCGTACA AGCTTTTGATTCATGGACTGTGTAGAGCGGATAGATGCGAGTGGGCTTACCGATTGTTCGAGGAAATGATAAGTAAGGATATAAAGCCTAGGTATCAAAC GTGCAATGTTCTTCTGGAGGAAGTTAGGCTTAATGGTATGCTTGCTGCTGCTGAAAAGATTGAAGCTTTCATGAAGCATGTATGA
AA sequence Show only first row Show all	>Lus10036975 pacid=23171091 polypeptide=Lus10036975 locus=Lus10036975.g ID=Lus10036975.BGIv1.0 annot-version=v1.0 MGRVIESGLLSPPEAYDSVVDILGKMRQMEQMNAFLHEMNRDNLVTLKTLGKAMRRYTGAGQWEDAVRLFDKLETFGLRKSTESMNLLLDTLCKERRVEK AREIFLELKAHIPSNANTYNIFIHGWCKINRVEEAYWTLQEMKGCGVKPCVLSYSTIVQFHCQQGKFGEVYSALDEMEEQGSPANVVTYTTILCHLTKSE DYDRGLEIVERMKSAGCRPDTLFYNALIHMLGRSGKVEEAVRVFAVEMARVGVVPNTSTYNSMVAMFCHQGQPSRGFDLLKEMESSMMCKPDVHTYCPLL QSCLKSWKVDGLLRQLLDDMANKHHLSLDMLAYKLLIHGLCRADRCEWAYRLFEEMISKDIKPRYQTCNVLLEEVRLNGMLAAAEKIEAFMKHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04130			Tetratricopeptide repeat (TPR)...		Lus10036975 [exp]	0	1
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	11.6	0.7620
AT3G47570			Leucine-rich repeat protein ki...		Lus10037840 [exp]	13.7	0.7086
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	14.6	0.7341
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	37.7	0.6485
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10033946 [exp]	45.5	0.6820
AT2G02148			unknown protein		Lus10031926 [exp]	58.9	0.6378
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	60.4	0.6804
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	73.2	0.6734
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10012188 [exp]	81.7	0.6527
AT5G62650			Tic22-like family protein (.1)		Lus10027537 [exp]	97.5	0.6471

Compare expression of checked genes

Lus10036975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.