Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13450 523 / 0 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT3G25990 499 / 1e-177 Trihelix Homeodomain-like superfamily protein (.1) AT5G01380 67 / 5e-12 Trihelix Homeodomain-like superfamily protein (.1) AT2G38250 66 / 7e-12 Trihelix Homeodomain-like superfamily protein (.1) AT1G76880 66 / 2e-11 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 64 / 9e-11 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G63420 60 / 1e-09 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT1G33240 52 / 4e-07 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G47660 51 / 6e-07 Trihelix Homeodomain-like superfamily protein (.1) AT5G28300 50 / 2e-06 Trihelix Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015824 [exp] 724 / 0 AT1G13450 533 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Lus10028584 [exp] 67 / 7e-12 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 66 / 2e-11 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10018887 [exp] 66 / 3e-11 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10004806 [exp] 62 / 2e-10 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1) Lus10002481 [exp] 54 / 1e-09 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10042806 [exp] 59 / 3e-09 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 59 / 3e-09 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 59 / 4e-09 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G179700 [exp] 598 / 0 AT1G13450 541 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.010G055000 [exp] 592 / 0 AT1G13450 518 / 0.0 GT-1, Homeodomain-like superfamily protein (.1.2.3) Potri.001G129900 [exp] 63 / 8e-11 AT2G38250 115 / 4e-30 Homeodomain-like superfamily protein (.1) Potri.002G068600 [exp] 64 / 1e-10 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.001G309100 [exp] 63 / 1e-10 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 62 / 2e-10 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 62 / 2e-10 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.012G095800 [exp] 62 / 4e-10 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.019G010200 [exp] 61 / 7e-10 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.006G221400 [exp] 58 / 7e-09 AT1G76890 162 / 1e-42 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036978 pacid=23171006 polypeptide=Lus10036978 locus=Lus10036978.g ID=Lus10036978.BGIv1.0 annot-version=v1.0 ATGGCGCCCAATTCACAAGACAACATGATCATCGAAGTCGTCTCACCCAATTGCGATTTGCATCCACTTCCTCTTCAGCAACACACCGACAATCCCAATA CCAATCCTCCTCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGATGATGCTGGGGGAGAGCAGCGGAGAGGACACCCACGAGATTAGGGCGCCGAAGAAGAG GGCGGAGACGTGGGTCCAGGACGAGATGAGGTGCTTGATCGCCATGAGGAGGGAGATGGATGGGCTTTTCAATACTTCGAAGTCGAACAAGCACCTTTGG GAGCAGATTTCGCTGAGAATGAGGGATAAAGGGTTTGATAGGTCTCCCACTATGTGTACTGACAAGTGGAGGAACTTGTTGAAGGAGTTTAAGAAGGTGA AGCATCAGGATAAAGGGTCTGCTAAAATGTCTTACTATAAGGAGATTGACGAGATTTTGAAAGAGAGGGGGAAGACTACTAGTCAACAGCAGCAGCAGTA TAAGTGTCCTACTCCGAGTTCTAAAGTCGATTCCTTTATGCAGTTTGCTGAGAAAGGTTTTGAAGAGACGAGTATATCTTTTGGACCCGTTGAAGCTAGT GGCAGGCCAACACTGAATCTTGAAAGACGCTTGGATCATGACGGTCATCCTCTTGCAATCACCGCAACCGATGCTGTTGGAGCAAGTGGAGTTCCTCCAT GGAACTGGAGAGAAACCCCTGCAAGTGGCTCCGAAAGTCAGTCATATGGCGGGAGGGTGATATCAGTCAAATATGGAGACTACTTGAGAAAGATCGGTAT CGATGGCACCGCTGATGCCATCAAGGAGGCTATCAGGTCGGCTTTCAGATTGAGAACGAAACGGGCGTTCTGGCTGGAAGATGAAGACCAAGTAATACGC AGCCTCGACCGGGACATGCCTTTGGGGAACTACAGTCTTCACCTCGACGAAGGTTTGGCTATAAAAGTGTGCTTGTACGACGAAACGGACCACATTCCAG TTCACACCGAGGAGAAACTGTTCTATACTGAGGACGACTACCGGGAGTTTCTGAGCCGAAGGGGATGGACATGTCTAAGGGAGGTTGACGGCTACAGAAA CATCGACAGTATGGATGATCTTCGACCCGGTGCCATGTATCGAGGAGTGAATTGA
AA sequence Show only first row Show all	>Lus10036978 pacid=23171006 polypeptide=Lus10036978 locus=Lus10036978.g ID=Lus10036978.BGIv1.0 annot-version=v1.0 MAPNSQDNMIIEVVSPNCDLHPLPLQQHTDNPNTNPPPPPPPPPPPPMMLGESSGEDTHEIRAPKKRAETWVQDEMRCLIAMRREMDGLFNTSKSNKHLW EQISLRMRDKGFDRSPTMCTDKWRNLLKEFKKVKHQDKGSAKMSYYKEIDEILKERGKTTSQQQQQYKCPTPSSKVDSFMQFAEKGFEETSISFGPVEAS GRPTLNLERRLDHDGHPLAITATDAVGASGVPPWNWRETPASGSESQSYGGRVISVKYGDYLRKIGIDGTADAIKEAIRSAFRLRTKRAFWLEDEDQVIR SLDRDMPLGNYSLHLDEGLAIKVCLYDETDHIPVHTEEKLFYTEDDYREFLSRRGWTCLREVDGYRNIDSMDDLRPGAMYRGVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	0	1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	1.0	0.9853
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	2.0	0.9834
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	2.2	0.9806
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10025837 [exp]	2.8	0.9793
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	4.0	0.9817
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	4.2	0.9821
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	4.5	0.9792
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	4.6	0.9743
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	5.5	0.9798
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	5.7	0.9792

Compare expression of checked genes

Lus10036978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.