Plant FIBer expression Database

Lus10036979 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67620 124 / 2e-36 Lojap-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015822
[exp]
266 / 3e-92 AT1G67620 168 / 2e-53 Lojap-related protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G105700
[exp]
164 / 4e-52 AT1G67620 184 / 1e-59 Lojap-related protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0260 NTP_transf PF02410 RsfS Ribosomal silencing factor during starvation
Representative CDS sequence
>Lus10036979 pacid=23171024 polypeptide=Lus10036979 locus=Lus10036979.g ID=Lus10036979.BGIv1.0 annot-version=v1.0
ATGTTGACGGCTGCTCTCCGATCAAATTTGTCATCCCTCCTCCGCCAGTCATGGCGGCTAGGGTTTCCATGCTCCAATCACGGTCTCTGTTCTTCAACCG
CTCAATCAGAAATAAACAAAAGCGACGGAAGCTTGCTGGAGCTTGGCGAGGTGGAGAAGATTCTCACCGACGTTAGAGCCGATGACGTTAAAGTGATACC
TGCCGGAAATCGCTACGATTGGGTCGATTACATGGTGATTGCCACCGGAAGGTCCACCTGGCATGTCAAGAACATCGCCGAAGCTCTTATTTACAAGGCA
GGTTTGGCTCAGCAAGCTCGAAGGGTGATAGTTCATGCTCTTGATGAGAATGCTAGAACTTACTACAAGTTGGAGAATCTTTGGAATTCAGATAAATCTC
AGAAGGATCCAGCTCAGGATCTAACAAAGGCTTTTGTGAAGATACGACCCAAGAACAATTCTAAGAAGCGAGTGCCGAGCAAATGA
AA sequence
>Lus10036979 pacid=23171024 polypeptide=Lus10036979 locus=Lus10036979.g ID=Lus10036979.BGIv1.0 annot-version=v1.0
MLTAALRSNLSSLLRQSWRLGFPCSNHGLCSSTAQSEINKSDGSLLELGEVEKILTDVRADDVKVIPAGNRYDWVDYMVIATGRSTWHVKNIAEALIYKA
GLAQQARRVIVHALDENARTYYKLENLWNSDKSQKDPAQDLTKAFVKIRPKNNSKKRVPSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67620 Lojap-related protein (.1) Lus10036979
[exp]
0 1
AT1G22140 unknown protein Lus10025627
[exp]
5.7 0.8416
AT5G64350 FKP12, ATFKBP12... ARABIDOPSIS THALIANA FK506-BIN... Lus10003760
[exp]
5.9 0.8344
AT3G11591 unknown protein Lus10016986
[exp]
7.9 0.8299
AT2G38280 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5... Lus10005043
[exp]
8.7 0.7985
AT3G25210 Tetratricopeptide repeat (TPR)... Lus10038215
[exp]
9.3 0.8368
AT1G64750 DSS1(I), ATDSS1... deletion of SUV3 suppressor 1(... Lus10030906
[exp]
10.8 0.8371
AT4G31720 STG1, TAFII15, ... TBP-ASSOCIATED FACTOR 10, SALT... Lus10005077
[exp]
11.8 0.8347
AT5G57860 Ubiquitin-like superfamily pro... Lus10036598
[exp]
12.0 0.8227
AT5G55140 ribosomal protein L30 family p... Lus10031912
[exp]
14.5 0.8265
AT2G18465 Chaperone DnaJ-domain superfam... Lus10020871
[exp]
17.3 0.7776

Lus10036979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.