Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14280 227 / 8e-71 GeBP DNA-binding storekeeper protein-related (.1) AT3G25950 214 / 1e-69 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G27270 187 / 5e-59 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015821 [exp] 280 / 1e-91 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014607 [exp] 206 / 5e-66 AT5G14280 311 / 3e-103 DNA-binding storekeeper protein-related (.1) Lus10032075 [exp] 150 / 4e-45 AT5G14280 197 / 3e-60 DNA-binding storekeeper protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178800 [exp] 238 / 9e-79 AT3G25950 266 / 3e-90 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Potri.001G335100 [exp] 234 / 1e-77 AT5G14280 333 / 6e-112 DNA-binding storekeeper protein-related (.1) Potri.010G056000 [exp] 65 / 2e-13 AT5G14280 72 / 6e-16 DNA-binding storekeeper protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10036981 pacid=23171329 polypeptide=Lus10036981 locus=Lus10036981.g ID=Lus10036981.BGIv1.0 annot-version=v1.0 ATGGAGCTTTCTCTAAACTTCTTCACCTCCTTCGCCTTCTTCGCCTCCGTCTACCTCTTCGCCTACTTCGTCGTCTTCCGCAATTGGGGTCCCAAACACC GCTCCGAAGCTTCCTCCTCCTTCATGTCCTTATCCCACGGTACTCCCGCCGTAATCCTCTCCATCCACGCCTTACTCCTCTCACCCTCCTCCTTCGCCGC CGTCAACTCCGCCGCACAGAGCGCCGTCCTCGAATTCAGCGCCGCGTACTTCGTCGCCGACCTCCTCCACTACCTGATCTTCTTCCCCCGCGACGTCCTC TTCATCCTCCACCACTTAGCGACGCTCTACGTTTTCCTCACCTCCCGCTGCCTCGTCGGCCGAGGAGCGTACGGCCTCCTGGAGCTGCTGATCCTGGCGG AGGCGACCAGCGCGTGTCAGAATGTGTGGAGTATTTCTAGGTTTAGGAAAGAGGAGTCGCCGGCGGCGGCGAGGATGTACGAGTTTCTGTCGCCGCCGTT TTACGTGTTTTACTCTGTTGTTAGGGGCGTTTTGGGGCCGGTGTTTATGATTCAGATGGTGGTTTTCTTCATCGGCGGGGAGGCTGAGGGGCTGATTCCG GTGTGGGTTTGGGGTTCATGGATGGTGGTGATTGTTTCGGCGATTGTGGTTAGTGTTTTGTGGGTGATGGGTCATTGGGTTGGTTGGTGTAAGGAGAAAG GGGTTTTAGGGTTTGATTTGGAGGAGAAGAAGATGATGAAGGTTAAGTAA
AA sequence Show only first row Show all	>Lus10036981 pacid=23171329 polypeptide=Lus10036981 locus=Lus10036981.g ID=Lus10036981.BGIv1.0 annot-version=v1.0 MELSLNFFTSFAFFASVYLFAYFVVFRNWGPKHRSEASSSFMSLSHGTPAVILSIHALLLSPSSFAAVNSAAQSAVLEFSAAYFVADLLHYLIFFPRDVL FILHHLATLYVFLTSRCLVGRGAYGLLELLILAEATSACQNVWSISRFRKEESPAAARMYEFLSPPFYVFYSVVRGVLGPVFMIQMVVFFIGGEAEGLIP VWVWGSWMVVIVSAIVVSVLWVMGHWVGWCKEKGVLGFDLEEKKMMKVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	0	1
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	2.4	0.8738
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	3.3	0.8807
AT4G35750			SEC14 cytosolic factor family ...		Lus10028388 [exp]	5.7	0.8516
AT4G29850			Eukaryotic protein of unknown ...		Lus10019737 [exp]	7.1	0.8454
AT2G46550			unknown protein		Lus10012748 [exp]	7.2	0.8645
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	7.7	0.8635
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	9.3	0.8722
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10011231 [exp]	9.5	0.8325
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	10.2	0.8593
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10034437 [exp]	11.8	0.8321

Compare expression of checked genes

Lus10036981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.