Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67630 730 / 0 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015820 [exp] 1066 / 0 AT1G67630 738 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Lus10015818 [exp] 100 / 8e-22 AT1G27880 434 / 2e-141 DEAD/DEAH box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G055900 [exp] 831 / 0 AT1G67630 837 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Potri.008G178951 [exp] 114 / 6e-30 AT1G67630 108 / 2e-28 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Potri.010G096301 [exp] 60 / 1e-10 AT1G67630 59 / 7e-11 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF04042 [flax] [poplar] DNA_pol_E_B DNA polymerase alpha/epsilon subunit B CL0021 [flax] [poplar] OB PF08418 [flax] [poplar] Pol_alpha_B_N DNA polymerase alpha subunit B N-terminal
Representative CDS sequence Show only first row Show all	>Lus10036982 pacid=23171244 polypeptide=Lus10036982 locus=Lus10036982.g ID=Lus10036982.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAATCAAAGTTGAGTTCGAGAAGAGCGGGTTCAGCTTGGACAATCAAGAGGAAATTCTCAAGAAATGTCTCACTTTGTGCATAAATTACA AGCTTACTCCAACAGATCTCGTTTCGAGCTGGGACGTTTACTATCTCAATCGGCAACTGAAAGATTTGGTCGTTCAGAATGCGGAAATGGATGGTTTTCT TTCCTACCTTCAGAATGAGCAGAAAGAAGCCGTGATTAAACAGAAGGCTGATCTGCATTTCTATTCGAGCAAAGATGTAGATATGATTTTGAATGACGAT GAGGAGAACTTGAAGGATGCAATCCTAAGAACTCCGGAGAAAGTTACGAATCTGTACTTGGATGAGCCATTTGATTCAGCGCTCATGTGGAACCGAAATG GTTACTCTTCCGAGAAGCCTTCTAGGCTTGTAACTCCTTTTGGACGGAGAACTGATAAGTTTGTAGCGAGACTCAGCATTGGTAATCTGCCTGATTCCGA GAATGGTGGTGGTGGTACGGAGGATGTTGGGGAGGATGATGTGATCAAGAGGGTTAAGCCTTTGAAGGGAGTTTCCTTGGCAGTTCATGGAGATGGTCCT AAGCCAGGTTGCAGATTCATGTATGACAGGATTGAAGACCGGTTTGATGCACTTGACGACAGGATCAGGAGGCGTGCTGCTGCATTTTCTGAATCTGGGA TTTATGAAGAACCAGCAGATCCTTCTGTTGCTTCACAGAGAAATGTATTTTGTGTTGGAATGATTTGCTGTGATGAGGAAGGTCGACTAAATGACAAGTC CATTTTGTTGCAAAGCAGCACTGAGCATTCTGGAGGACAGCGTGCTCGTCTAGATCTACACAAATTGAACCATTTCTCTGTTTTTCCAGGACAGATTGTA GGTGTTGAAGGTCACAATCCAAGTGGATACTGTTTGATTGCGTCGAAGCTTGTAGATTCTGTTCCTTTGTCAGGAAACAATGTCAAAGATTTGCACCCTG TGAAGAGACGGGCTTTGGACCAAGAGCTTGAGTCAGCCGATTTATCCGCTCTAGAAGGAGAGATTTCAGTGCTTATTGCTTCAGGTCCGTTTACCACAAC CGACAACTTATTCTATGAACCTCTCTCTGAGCTGCTAGCATATGCCAGAAGAAAGCAACCACAGTTGCTTATACTGTTGGGACCGTTTATTGATTCTGAA CATCCTGATATCAAGAAAGGAACTGCAGACATTAGCTTCGATGACATTTTTCGTCTTGAAATCAGCAAAAGGGTGCAAGATTACGTTGAACACATGGGTC TGAATGCACGAGTGATTCTCGTACCATCTATACGCGATGCTAACCACGACTTCGTTTTCCCTCAGCCTGCGTTCGATATTAATCTTCCAGAACTCAAACA TCAGGTCACTAGCATCACGAATCCAGGCACTTTCGAAGCCAATACGGTGAAAGTTGGTTGCTGCACGGTGGACATTCTCAAGCAGCTCAGCGGAGAGGAG CTATCTCGGTATCCCAAAGATGCACCACCAAGTGACCGTATGAGCAGACTTTCAAGCCATATCCTAAGTCAGCAAAGGCATGTCTTCTTCTATCCTCTCT ATCCACCGGCAGAAGATGTCCCTATAGATTTCTCACTCGCTCCGAAAGCTCTCCACATCGATTCTGCACCCGACATTCTTATACTACCTTCAGACACCAA GTACTTCCTTAAGGTTTTAACGATTGGCGGAGGAAATGAAGATGAAGAGGCAAAGAAGTGCATCTGTATAAACCCGGGAAGGCTGGCTAAGGGTGAAGGT GGTGGCACGTTTGCAGAGATCGACTATGGCGGTAGCCCTGATAAAATGAACGCTTCGATCTTGAGCATATAG
AA sequence Show only first row Show all	>Lus10036982 pacid=23171244 polypeptide=Lus10036982 locus=Lus10036982.g ID=Lus10036982.BGIv1.0 annot-version=v1.0 MEEEIKVEFEKSGFSLDNQEEILKKCLTLCINYKLTPTDLVSSWDVYYLNRQLKDLVVQNAEMDGFLSYLQNEQKEAVIKQKADLHFYSSKDVDMILNDD EENLKDAILRTPEKVTNLYLDEPFDSALMWNRNGYSSEKPSRLVTPFGRRTDKFVARLSIGNLPDSENGGGGTEDVGEDDVIKRVKPLKGVSLAVHGDGP KPGCRFMYDRIEDRFDALDDRIRRRAAAFSESGIYEEPADPSVASQRNVFCVGMICCDEEGRLNDKSILLQSSTEHSGGQRARLDLHKLNHFSVFPGQIV GVEGHNPSGYCLIASKLVDSVPLSGNNVKDLHPVKRRALDQELESADLSALEGEISVLIASGPFTTTDNLFYEPLSELLAYARRKQPQLLILLGPFIDSE HPDIKKGTADISFDDIFRLEISKRVQDYVEHMGLNARVILVPSIRDANHDFVFPQPAFDINLPELKHQVTSITNPGTFEANTVKVGCCTVDILKQLSGEE LSRYPKDAPPSDRMSRLSSHILSQQRHVFFYPLYPPAEDVPIDFSLAPKALHIDSAPDILILPSDTKYFLKVLTIGGGNEDEEAKKCICINPGRLAKGEG GGTFAEIDYGGSPDKMNASILSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	0	1
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	1.0	0.9553
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10015820 [exp]	2.2	0.9410
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	3.2	0.9539
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	4.8	0.9132
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	7.1	0.9106
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	7.3	0.9502
AT1G61000			unknown protein		Lus10020820 [exp]	7.5	0.9202
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	7.7	0.9254
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	8.2	0.9424
AT1G75150			unknown protein		Lus10010814 [exp]	8.5	0.9299

Compare expression of checked genes

Lus10036982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.