Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27880 288 / 8e-85 DEAD/DEAH box RNA helicase family protein (.1) AT4G35740 115 / 2e-26 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G60930 103 / 2e-22 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G10930 100 / 3e-21 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT3G05740 92 / 4e-19 RECQI1 RECQ helicase l1 (.1) AT1G31360 92 / 6e-19 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT5G27680 82 / 9e-16 RECQSIM RECQ helicase SIM (.1) AT3G01540 53 / 7e-07 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G31970 50 / 5e-06 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 50 / 6e-06 DEAD box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015819 [exp] 265 / 5e-84 AT1G27880 50 / 4e-07 DEAD/DEAH box RNA helicase family protein (.1) Lus10015818 [exp] 274 / 3e-82 AT1G27880 434 / 2e-141 DEAD/DEAH box RNA helicase family protein (.1) Lus10034749 [exp] 140 / 2e-34 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10019129 [exp] 120 / 4e-30 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1) Lus10041840 [exp] 111 / 5e-25 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10028387 [exp] 107 / 1e-23 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10015467 [exp] 101 / 1e-21 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10042451 [exp] 98 / 8e-21 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 97 / 1e-20 AT3G05740 816 / 0.0 RECQ helicase l1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056500 [exp] 410 / 8e-131 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G107400 [exp] 119 / 9e-28 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.003G015800 [exp] 100 / 2e-21 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.013G161200 [exp] 99 / 4e-21 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G019800 [exp] 96 / 3e-20 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 92 / 4e-19 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G026400 [exp] 87 / 3e-17 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.012G084600 [exp] 51 / 3e-06 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G047301 [exp] 50 / 6e-06 AT5G51280 520 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.003G098800 [exp] 50 / 7e-06 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10036983 pacid=23171127 polypeptide=Lus10036983 locus=Lus10036983.g ID=Lus10036983.BGIv1.0 annot-version=v1.0 ATGGACTCCGATTCAGACTCCGGCGGCTCTTACGTCTCCGCCACGCCTCCAAGAAAGTCAAGTCCATCGCCGGCGAAGTTTCCTCCACCACCGAAGCCGC TACGGCAATCATCACGTACCAATAAAAGAGCCGGAAACAAAGCTCAATCCTCAGATTCTAAATCCCTAGAACATCCATCGAACTCAACCGGTGCTCCTCT CCGGTCAAATGGAGACATCGATAGGTCATTCGATTCAACGCCTCTATCGAACTTGCCGTTCCAGATCTGCTATTCTTCAGCTCAAAACCGATCGATTTCG TCCAGTTCAATGGAGACTCTCCCCGCCGGATTCTTCTCCAGGTCTGCTTCCTTCTCCAAAATCCGAAGGGCTTCTCTCACTTTCGAATCAGTTGACGAGG AATGCCGATTCTCTAATTCCAAGCAGCCTGATCCTTCCACGGCGGACCAAGTCCCGAGACCTAGCAAAATGAGGAAGAATCTTAATCTGATTAGAGGTGA AGTGACTGCGCCGCCGTTGGTCAAAATTCGGAACCCTAACGAAGGCAACTTCGTGAAGCTCAATACGAACAAGAACAAGTTTGTTAACAGGAAAGGGAAA AGGAAGAGTAGCTACGGTTCGAACAACCGGAGGTATTACCGAAGGAGTAAAGGGAAGTTGAAGGCGGCGGATGGCGAAGCTGAAGTGGGAGGGGCGATCT GCGACGAGGAAGGTTTAGTCACGGAAATCACTCCGCAGAAGCCAAGTAAAGGCAGTGAGCTGATTCAGGAAGCGGTTTTTGCTGCTAGGGATGAGCCCTC TGATGAGAATTTGGTGAGGTTGTTGAGTTTGATGTACGGATACAGTTCGTTTAGGGATGGGCAGCTTGAAGCTATTAAAATGGTGCTTGATGGGAAATCG ACCATGTTGGTTTTGCCCACTGGAGCTGGAAAATCACTTTGCTATCAAATTCCTGCCGTTATTTTGCCTGGGATAACTTTAGTAGTAAGCCCGTTAGTCG CATTGATGATTGATCAGCTTAAACGGTTGCCTCCAGAGATTCAGGGTGGTCTTTTCTGTAGCAGTCAGACGCCTGAGGAGGTTGCAGAAACAATCAGGCA GCTTCAGCAAGGAGCCATTAGGGTAAGCTTGGTTAAGGTGCTTTTTGTTTCGCCAGAGAGGTTCCTGAACACAGATTTCTCGTCGCTTTTGTCTGAGATT CCTGTTTCCCTTCTGGTGGTCGATGAAGCTCACTGTATCTCTGAATGGCCTTCATACATGAGGCTCAGAGCATCCTTGCTACGTGTCCGCCTCAGCATTG GATGGATTCTCGCAATGACAGCAACGGCTACTACCACTACTTTGAATGCTGTTATGTCTGCTCTAGATATTCCTTCACCTAATCTTATTCACAAAGAGCA GCTGAGAGAGAACCTACAGTTGTCAGTATCTTTTAGTAGAAACAGGCAAGTTGTTGCAACTGTGGCATTTGGCATGGGGCTGGACAAGAGTGATGTTGGA GCTGTGATTCATTACAGTTTGCCAGAAAGCCTGGAGGAATATGTTCAGGAAATTGGACGTGCTGGAAGGGATGGGCGGGTGTCCCATTGCCATCTATTTT TCGATGATACCACCTATTTCAAGCTTCGAAGTCTTATGTACAGTGATGGAGTAGATGAATATGCAGTAAACAAGTTCCTCTCTCAAGTTTTTAGCAGTGG AACTGGCTCAGTAGAGAAGGTCCATTCGATTATCAAAGAATCCGCCTCTCGCAAATTCGATATGAAAGAAGAGGTGATGCTCACACTTCTAACACAGTTG GAGTTGGGGGATGTGAAATACTTGCGCTTACTGCCTCAAGTCAGAAGGCTAGAAGAAATCCACAATGCTGTACAGTTCGCCGTGAATGACTGTAAAAAGA CGCAAGGTTGCAAGGGCAGTGAGCACACAATGTGCTTACAGAGAAGGATTCTGGACTACTTCAAGGAAGAAGACACCAGCCACGAACCAAAGAAAGAATC GGCTCTCCAATGCAGCCCGTTTCTGCGAGCAGATATAAAGGTCTTTCTGCAGAGCAACTCGCATACGGTGAAGTTTACTCCGCGAGCAGTGGCGAGAATC ATGCACGGGATTGCCAGTCCAGCTTATCCTTCCTCAACTTGGTCCAGCACTCATTTCTGGGGAAGGTACACTGGAACAGATTTTGAAGTGGTGATGGAAG CTGCCAAGGGAGAGCTAATCAAGTGTGCTGGTAAAGGGTAG
AA sequence Show only first row Show all	>Lus10036983 pacid=23171127 polypeptide=Lus10036983 locus=Lus10036983.g ID=Lus10036983.BGIv1.0 annot-version=v1.0 MDSDSDSGGSYVSATPPRKSSPSPAKFPPPPKPLRQSSRTNKRAGNKAQSSDSKSLEHPSNSTGAPLRSNGDIDRSFDSTPLSNLPFQICYSSAQNRSIS SSSMETLPAGFFSRSASFSKIRRASLTFESVDEECRFSNSKQPDPSTADQVPRPSKMRKNLNLIRGEVTAPPLVKIRNPNEGNFVKLNTNKNKFVNRKGK RKSSYGSNNRRYYRRSKGKLKAADGEAEVGGAICDEEGLVTEITPQKPSKGSELIQEAVFAARDEPSDENLVRLLSLMYGYSSFRDGQLEAIKMVLDGKS TMLVLPTGAGKSLCYQIPAVILPGITLVVSPLVALMIDQLKRLPPEIQGGLFCSSQTPEEVAETIRQLQQGAIRVSLVKVLFVSPERFLNTDFSSLLSEI PVSLLVVDEAHCISEWPSYMRLRASLLRVRLSIGWILAMTATATTTTLNAVMSALDIPSPNLIHKEQLRENLQLSVSFSRNRQVVATVAFGMGLDKSDVG AVIHYSLPESLEEYVQEIGRAGRDGRVSHCHLFFDDTTYFKLRSLMYSDGVDEYAVNKFLSQVFSSGTGSVEKVHSIIKESASRKFDMKEEVMLTLLTQL ELGDVKYLRLLPQVRRLEEIHNAVQFAVNDCKKTQGCKGSEHTMCLQRRILDYFKEEDTSHEPKKESALQCSPFLRADIKVFLQSNSHTVKFTPRAVARI MHGIASPAYPSSTWSSTHFWGRYTGTDFEVVMEAAKGELIKCAGKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10036983 [exp]	0	1
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	3.5	0.9558
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	6.0	0.9521
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	6.0	0.9225
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024856 [exp]	7.5	0.9413
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	8.3	0.9505
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	8.9	0.9473
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	9.9	0.9404
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	10.0	0.9491
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	13.0	0.9468
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	13.5	0.9429

Compare expression of checked genes

Lus10036983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.