Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 421 / 3e-141 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 258 / 4e-78 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 254 / 1e-76 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 251 / 4e-75 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 246 / 1e-73 RLK receptor lectin kinase (.1) AT1G70110 242 / 5e-72 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 241 / 9e-72 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45420 241 / 1e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 239 / 2e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 240 / 3e-71 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004166 [exp] 621 / 0 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 606 / 0 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 452 / 2e-152 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 271 / 2e-82 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 263 / 1e-79 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 262 / 2e-79 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 263 / 4e-79 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 257 / 1e-77 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 257 / 2e-77 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193000 [exp] 471 / 9e-161 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 461 / 2e-156 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 291 / 9e-91 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 285 / 9e-88 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G455500 [exp] 283 / 3e-87 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.018G028800 [exp] 279 / 5e-86 AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 270 / 3e-82 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 268 / 1e-81 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 263 / 5e-80 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 262 / 1e-79 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10036986 pacid=23171185 polypeptide=Lus10036986 locus=Lus10036986.g ID=Lus10036986.BGIv1.0 annot-version=v1.0 ATGATGCTGAAACTGAAATACAGGCCTTCTCTTTTCTTCATTTGTTTCGTGGTCAATTTTTACGTCGTCGGTGGCGTCAACTTCAACTATTCGGCATTTC GGGGGACCACCACCGACGATTTCATCTTACATAAATCGTCCCTCGGTGCTGACATGGTGCACATCACTGCTGACTACGAGCGCTGGGATATCACCAATAA GTCGGGACGGTTGCTCTTCCACCGGCCGGTCCACCTACTCAACTTCAAGACGAGCTTCGTTTTCAGAATTGTTCCGGTGACTCAGCTGCCAGGGGAAGGT CTGGCATTCGTGCTTGCCGGAGACCCGAACCTTCCGGAACACAGCTCGGCTAAAATCGTGGCGGTCGAATTCGACACGAGGAAGAGCTATGCTGAGGATT TAGACGACAATCATGTTGGGGTGAATTTTGGGTCGGTGTACTCCGTTCACCAAGCTCCTCTGGCAGGAATCGCGAACCTGTCGTCAGGTTCCGATATCAC CGCCAGAATCGAGTACGACGGAGAGAATATGGCTGTCTTCGTCGGAACAAGAAGCACCCCTGTAATTAATCGAAAACTGGATCTGTCACTGTATCTTCGA GACGGGGTGTATGTCGGATTTACCGGGTCGACCAGTCAATATACCGAACTGAACCTCATCATTTCCTGGGACTTCAGCGGAACAGAAATCCCACAAAGAA GAAAGAGATGGTTCAGAATTGCTGCATCAATCGTATCAGCAGTCGTGATTCTGATATTTATATCTGGATTAGTGTACTGGAAAAGAAGAAATGTAGATGA CAGCGACGACTCCGACCCCAAATTAATCGACGAGGCGATTCAGGCTTCGTCGGCTCCTAGAAAGTTCAAGCTGAAAGAGTTGAGGAAGGCGACGGGGAAT TTCAATTCGAGGAACAAGGTTGGGAAAGGAGGATTCGGTACTGTATACAAAAGGATCATAAAGAATAAGGAGATCGCGGTGAAGAAAGTGTTGGAGAAAA CGACTCAGGGGAAGCAAGAGTTCATATCGGAAGTCATCACAATTGGAAACCTTCACCATCGGAATCTGGTCAAGCTAATTGGATGGGCTTACGAGAAGAA GGAGTACCTCCTGGTTTACGAATACTTGCCCAACGGAAGCCTGGATAGGTTCATTTTCCCAACAGTTAATGGATCGTTGAATTTGAGCTGGGCTATCAGG TTGCGAGTGATTTCAGGATTAGCTCGGGCGTTGGAGTATCTACACACGGGCTGCGAGAAGAAAATTCTTCACAGGGATATCAAGTCCAGTAATATAATGC TGGACTTGAACTTCAATGCGAAGCTCGGCGATTTTGGCTTGGCCAGGACCTGTGTCCAGCCAAGCCAGACCCACCACTCCACCAAGGCAATGGCGGGGAC GCCCGGTTACATCGCTCCTGAAGTCTACCTGACTGGATGGGCAACGGAGGAGGCAGATGTTTTTGCATTTGGAATCGTGGTCCTTGAAGTCGCCTGTGGG AGGAAACCAGGTAGCTGCTGGATCGATCAAGATGAGAACGGGACAAATATTGTTAAGTGGGTTTGA
AA sequence Show only first row Show all	>Lus10036986 pacid=23171185 polypeptide=Lus10036986 locus=Lus10036986.g ID=Lus10036986.BGIv1.0 annot-version=v1.0 MMLKLKYRPSLFFICFVVNFYVVGGVNFNYSAFRGTTTDDFILHKSSLGADMVHITADYERWDITNKSGRLLFHRPVHLLNFKTSFVFRIVPVTQLPGEG LAFVLAGDPNLPEHSSAKIVAVEFDTRKSYAEDLDDNHVGVNFGSVYSVHQAPLAGIANLSSGSDITARIEYDGENMAVFVGTRSTPVINRKLDLSLYLR DGVYVGFTGSTSQYTELNLIISWDFSGTEIPQRRKRWFRIAASIVSAVVILIFISGLVYWKRRNVDDSDDSDPKLIDEAIQASSAPRKFKLKELRKATGN FNSRNKVGKGGFGTVYKRIIKNKEIAVKKVLEKTTQGKQEFISEVITIGNLHHRNLVKLIGWAYEKKEYLLVYEYLPNGSLDRFIFPTVNGSLNLSWAIR LRVISGLARALEYLHTGCEKKILHRDIKSSNIMLDLNFNAKLGDFGLARTCVQPSQTHHSTKAMAGTPGYIAPEVYLTGWATEEADVFAFGIVVLEVACG RKPGSCWIDQDENGTNIVKWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06740			Concanavalin A-like lectin pro...		Lus10036986 [exp]	0	1
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	13.0	0.6890
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	24.6	0.6920
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	40.3	0.6644
AT5G57610			Protein kinase superfamily pro...		Lus10001314 [exp]	69.9	0.6635
AT4G04480			unknown protein		Lus10015548 [exp]	77.8	0.6371
AT2G26270			unknown protein		Lus10038079 [exp]	92.8	0.6246
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	111.1	0.6377
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	112.9	0.6408
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Lus10012644 [exp]	145.6	0.6191
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	173.6	0.6127

Compare expression of checked genes

Lus10036986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.