Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42710 352 / 8e-119 Ribosomal protein L1p/L10e family (.1) AT3G63490 108 / 2e-26 EMB3126 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015810 [exp] 310 / 1e-105 AT2G42710 94 / 1e-22 Ribosomal protein L1p/L10e family (.1) Lus10040258 [exp] 316 / 5e-101 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10015809 [exp] 291 / 2e-98 AT2G42710 227 / 2e-73 Ribosomal protein L1p/L10e family (.1) Lus10004691 [exp] 177 / 3e-53 AT2G42710 147 / 5e-42 Ribosomal protein L1p/L10e family (.1) Lus10036985 [exp] 154 / 3e-41 AT2G44220 218 / 7e-65 Protein of Unknown Function (DUF239) (.1) Lus10005337 [exp] 111 / 4e-27 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Lus10039589 [exp] 110 / 7e-27 AT3G63490 476 / 2e-169 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143000 [exp] 355 / 1e-120 AT2G42710 367 / 4e-125 Ribosomal protein L1p/L10e family (.1) Potri.001G262400 [exp] 119 / 3e-30 AT3G63490 427 / 2e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2) Potri.009G057100 [exp] 116 / 4e-29 AT3G63490 427 / 3e-150 EMBRYO DEFECTIVE 3126, Ribosomal protein L1p/L10e family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10036988 pacid=23171148 polypeptide=Lus10036988 locus=Lus10036988.g ID=Lus10036988.BGIv1.0 annot-version=v1.0 ATGGCAGTGACGAAGGTCCTCTTCTCCCAAGCCCGTCGCCACTTCCCTGCCAGGGTTCCCTTCCACCTCCATTCCTCTCAGTCCTTGATATCTCGGAGTT GGTTTTCCTCCGATTCGGACCCCAATGGAACTCCAACGCCGGCTCCGAATCCACGAAGTCAACCTGTCCTAGTCCAGCCAGTTTCCTACGAACCGAAGCC AAAGGAACCGACGGCGGAGACCGGTAAAGAGTCGTCGACGAATGATCAGCCTCCTCCGCAACAGCAGTTCTCAAGACAGCCGCGAGGATTCCAAAATTCG TCGGAGGTTCGATCGAATTGGAGTCGGGAGGACGCCAGGTATGTGAAAGACGCGCCATTCGTTGTACCAATTTCGTATGCGCCTCGTGTGGCGCCCTTGC CGGAGGACAAGGTGGAAGGTGAAATGCAAGAGAGTGCAAAGGACGGCGAGGACATGAAGACCGAGGTTCGCCGGGTTGAAACGGAGAATAGGGCGATGAG GAGGATTTTGAGGATGGAGGAACAAACAGAGCAGGCTGTTGTGCCTTTTCCTAGATTGATCGTACCGGAGAAGAAGAAAGAGAAGAGGCCACTTCTGGAA TTGATGGACGCCATTCGCCAAGTCAAGATTGTTCGGGGCACTTTAACTTTGCCACATGGGGGAGAGAAGGTTCTGAAAGTGGTATTCTTTGCTGAAGGAG CAGAGGCAGAAGAAGCTAGAGCTGCAGGTGCCGACATTGTTGGAGGCATTGAACTTATTGAAGAAATTGCGAGTACTGGCAAGGTGGACTTCGACAAATG TTATGCAACTCGTCAGTTGTATCCCCGGGTTGCCAAGATTGCAAGGATTCTTAACCGTCATGGCTTGATGCCTGATGCAAAGCAAGGCACTGTTGTTAGC GATGTAACTAGGGCAGTAAAAGCAGCAAAGCAGAATCAGATAAAGTTCAGAATGGACAAATCATCCATCGTTCATGTGGGACTTGGAAAGGCAAGTTTCA GCGAAGAGTCCCTACGTGAGAACATTGGTGCTTTTATGAATGCCCTTCTGCAAGCAAAGCCTGCTGGCTTGAAGAAAACTTCTAAATATGCTGGATATGT GAACTCATTCCATATATGCAGCACGATGGGAGAAGGATACCCTGTTTCAATACAGTCGTTGTCGAAAGCTGTAGATCATTTCCACAAAGTGCAGCTCAAG TAA
AA sequence Show only first row Show all	>Lus10036988 pacid=23171148 polypeptide=Lus10036988 locus=Lus10036988.g ID=Lus10036988.BGIv1.0 annot-version=v1.0 MAVTKVLFSQARRHFPARVPFHLHSSQSLISRSWFSSDSDPNGTPTPAPNPRSQPVLVQPVSYEPKPKEPTAETGKESSTNDQPPPQQQFSRQPRGFQNS SEVRSNWSREDARYVKDAPFVVPISYAPRVAPLPEDKVEGEMQESAKDGEDMKTEVRRVETENRAMRRILRMEEQTEQAVVPFPRLIVPEKKKEKRPLLE LMDAIRQVKIVRGTLTLPHGGEKVLKVVFFAEGAEAEEARAAGADIVGGIELIEEIASTGKVDFDKCYATRQLYPRVAKIARILNRHGLMPDAKQGTVVS DVTRAVKAAKQNQIKFRMDKSSIVHVGLGKASFSEESLRENIGAFMNALLQAKPAGLKKTSKYAGYVNSFHICSTMGEGYPVSIQSLSKAVDHFHKVQLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	0	1
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	2.8	0.8759
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	6.2	0.8365
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Lus10039230 [exp]	6.5	0.8168
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10032381 [exp]	8.0	0.8215
AT5G27395			Mitochondrial inner membrane t...		Lus10029978 [exp]	9.8	0.8008
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10016548 [exp]	10.4	0.7835
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	10.7	0.8406
AT4G31985			Ribosomal protein L39 family p...		Lus10019065 [exp]	14.9	0.7721
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018881 [exp]	20.0	0.7946
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	20.6	0.8207

Compare expression of checked genes

Lus10036988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.