Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 223 / 2e-68 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015811 [exp] 445 / 3e-153 AT5G14230 727 / 0.0 unknown protein Lus10022339 [exp] 240 / 1e-74 AT5G14230 974 / 0.0 unknown protein Lus10041588 [exp] 240 / 2e-74 AT5G14230 962 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057300 [exp] 280 / 9e-90 AT5G14230 843 / 0.0 unknown protein Potri.001G333600 [exp] 238 / 6e-74 AT5G14230 975 / 0.0 unknown protein Potri.011G151300 [exp] 177 / 4e-51 AT5G14230 568 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10036989 pacid=23171191 polypeptide=Lus10036989 locus=Lus10036989.g ID=Lus10036989.BGIv1.0 annot-version=v1.0 ATGCCGCTGTTCAGCGACTCGGCTACCGTCGGACTCCTCGCTGGGAAACAACAGGTCACCGTCTTCGTCAGCTCTGGCCCGCTCTACCTTTCTTCCGCCG GCAAGAAAGTTTTCCACCACGTAGATTACGGAACGCAGGTCTCGCAGCTCCTAGTCGACTCCGTTAACCGCAACGACACCAATTCAGCGATCGGATTCCT CGATGATCCGTTCTGCGACGTCAACTTCATCGGCACCGTCAGCCTCCGGTCTCGGAAGACGGAGGTCGTGCTGAACGGCGAGTCCGCTCACGAGGTCCGA TTCGATTACGAGGAGTTCAGGACCGACGTCACCGCTCTCTTCCTCGCCGCTCACTCCGGCAACTCGCCTCTCGTCAGGAAGTTGCTGAATCTGGGAGCCA ACCCGAACCAGAAGCTGTTCCGAGGCTACGCGACAACTGCAGCTGTAAGGGAAGGTCATATGGAGACAGTGGAGGCGCTAATGAAAGCGGGAGCGTCTCA GGAGGCTTGCGAGGAAGCTTTAATGGAAGCGAGCTATTTCGGTCAAGCTAGGCTGGCGGAGATGCTCATGAGCTCCGATCTCATACGCCCCAGAATTGCA GTTCATGCTCTTGTCTCCGCTTCCTGCAGGGGTTTCGTTAATGTTGTGGACGCGCTCCTTAAGGCATTTCATCGAACATGTTGCCTACTACATTGA
AA sequence Show only first row Show all	>Lus10036989 pacid=23171191 polypeptide=Lus10036989 locus=Lus10036989.g ID=Lus10036989.BGIv1.0 annot-version=v1.0 MPLFSDSATVGLLAGKQQVTVFVSSGPLYLSSAGKKVFHHVDYGTQVSQLLVDSVNRNDTNSAIGFLDDPFCDVNFIGTVSLRSRKTEVVLNGESAHEVR FDYEEFRTDVTALFLAAHSGNSPLVRKLLNLGANPNQKLFRGYATTAAVREGHMETVEALMKAGASQEACEEALMEASYFGQARLAEMLMSSDLIRPRIA VHALVSASCRGFVNVVDALLKAFHRTCCLLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14230			unknown protein		Lus10036989 [exp]	0	1
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10009669 [exp]	4.5	0.8727
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	6.2	0.8902
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	8.5	0.8788
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	8.5	0.8535
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	13.5	0.8776
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	16.4	0.8762
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10014453 [exp]	17.0	0.8178
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	18.6	0.8398
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10026331 [exp]	20.3	0.8713
					Lus10013619 [exp]	20.4	0.8341

Compare expression of checked genes

Lus10036989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.