Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 512 / 7e-175 unknown protein AT2G25600 67 / 1e-11 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT2G03430 63 / 7e-11 Ankyrin repeat family protein (.1) AT5G57740 63 / 2e-10 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT4G32500 59 / 6e-09 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 56 / 7e-08 AKT3, AKT2/3 potassium transport 2/3 (.1) AT3G04710 55 / 9e-08 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G13530 54 / 4e-07 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G26650 54 / 4e-07 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT5G12320 50 / 5e-07 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015811 [exp] 1061 / 0 AT5G14230 727 / 0.0 unknown protein Lus10022339 [exp] 550 / 0 AT5G14230 974 / 0.0 unknown protein Lus10041588 [exp] 546 / 0 AT5G14230 962 / 0.0 unknown protein Lus10020272 [exp] 85 / 4e-17 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 81 / 6e-16 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10003748 [exp] 77 / 1e-14 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10007432 [exp] 71 / 7e-13 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10037694 [exp] 69 / 1e-11 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 67 / 2e-11 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057300 [exp] 702 / 0 AT5G14230 843 / 0.0 unknown protein Potri.001G333600 [exp] 617 / 0 AT5G14230 975 / 0.0 unknown protein Potri.011G151300 [exp] 412 / 6e-136 AT5G14230 568 / 0.0 unknown protein Potri.013G062000 [exp] 105 / 1e-23 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 85 / 3e-17 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 67 / 2e-12 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.017G135400 [exp] 69 / 4e-12 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.002G213200 [exp] 68 / 7e-12 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.004G083300 [exp] 68 / 9e-12 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.012G043000 [exp] 65 / 1e-10 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10036990 pacid=23171043 polypeptide=Lus10036990 locus=Lus10036990.g ID=Lus10036990.BGIv1.0 annot-version=v1.0 ATGGATCGGATCCTGCTTCAATCTTCCAAGCCGATGCTTCACACGAACGTTTACAGTAACGCTCTTGCGGCCGCCGTTGTTAGCAGACAAATCTCTGTAG TCAGATTGCTCTTGCAGGCAGGGGTGAGAGTGGACACCAAGGTGAGAATCGGCGCGTGGTCGTGGGACATGGAAACCGGAGAAGAAATCCGAGTCGGATC AGGATTAGCCGAAGCCTACTGCGTCACATGGTGCGCAGTGGAGTATTTCGAGTCCACGGGAGCTATCCTGCGCATGCTCCTCGGCCATCTCCTCCCTAAC GTAACCCATCTCGGAAGGACTCTGATTCACCATGCTATCCTCTGCAACAATGCCGAAGCGGTTAAAGTCCTCATAAACGTCGGCGCAGATGTAGAATATC CAGCCGTAACTTCGAGAAGCCAAGTCCGGCCGATCCACTTAGCGGCGAGGCTCGGATCTGCTAGAGTCATCGAGCAGTTGATCAGCGCTGCCGCCAACGT CGATTCAATGACAAACTCCGGCGAGACTGCGCTGATGATCTCTGCGAAGTGTAAGCAAGAGGAATGCCTCAAGATTTTAGCATCTTCCGGTGCCGATTTT GGTTTGCTCGATTCCGATGGCGATTCGGTTGTGTCGATCGCGAGGAAGGGAAATTGGGAGCTAGGGTTTCAACAGGCGGTGATGGAGGTGATTCGGTCGG GGAAGAGTTTGAAATCGAGCAGTTTTGCGGTTTTTTCTCCGTTAGCGTTCTCGATTCGAGTGATGGATCTCCAAGCGCTGAAGAAGCTGACGGAGAAAGC GGACGTGGATCTCGACGAACAGGACGGAGATGGTTTTACTGCTCTGATGGTGGCCGCCGCCGGAGGCCACATCGACGCTTTCAGACTGCTTCTCCAAGCA GGAGCGGACGTGAAATTGAGGAACAAACGGGGAGAAACGGCAATGAATTTGGCAGAATTGAATCGAAACCGGGTCGAATCGTTCGAGAAAGCTCTCATCC AGTACGGATTCTACCAAATGAATTGCTCGGTTGTCGGAAACAACGCCCTGCATCGCGCCGCCGTGAGAGGCGAGCTAGTGTTAGTCCAGACGCTAATCGC ACAGGGCTGCGACGTGAATGCCTCCGACGGCGACGGATACACCCCGCTAATGCTCGCAGCGAGAGGCGGGCATGGAAAAATCTGCTCGCTCCTCATCTCA TCAGGAGCGAGAGTCGATTTCAAGAACGAGAGGAGCGAGACGGCGCTGCTTCTGGCGAGGAAGAGCAGCGGCGGCGGGGGAGAGGCGGCGGAAGTGATTT TAGACTACAAGGCGCGGGAGATGGTTCTGGAAGGCGGCAGGTTGAAGAAGCATACGAGGGGCGGGAAAGGGAAGCCGCAATACAAATCGGTGGAGATGGT ACCCGCGGAGGGGGTTCTCCGGTGGCAGAAGTGGTGGTGGTGGTGGGTGAAGACGAGCGTGGTGTGTAAGGAAGCGAAGGTTGGTCCGGCGACGAAGTTC CGGTGGAACCGGCGGAGGGCTGCGGACTTGGAGGAGCCCGGGTTGTTTCATGTGGTGACTACGAAGGGGAAGGTTGTGCATTTCGTATGTGAAGACGGTG GGGATGAGATGGCGGAGCTTTGGGTCAGAGGGATTAAGATCATCACTCGGGAAGCCATTTTTGGCAAGTGTTAG
AA sequence Show only first row Show all	>Lus10036990 pacid=23171043 polypeptide=Lus10036990 locus=Lus10036990.g ID=Lus10036990.BGIv1.0 annot-version=v1.0 MDRILLQSSKPMLHTNVYSNALAAAVVSRQISVVRLLLQAGVRVDTKVRIGAWSWDMETGEEIRVGSGLAEAYCVTWCAVEYFESTGAILRMLLGHLLPN VTHLGRTLIHHAILCNNAEAVKVLINVGADVEYPAVTSRSQVRPIHLAARLGSARVIEQLISAAANVDSMTNSGETALMISAKCKQEECLKILASSGADF GLLDSDGDSVVSIARKGNWELGFQQAVMEVIRSGKSLKSSSFAVFSPLAFSIRVMDLQALKKLTEKADVDLDEQDGDGFTALMVAAAGGHIDAFRLLLQA GADVKLRNKRGETAMNLAELNRNRVESFEKALIQYGFYQMNCSVVGNNALHRAAVRGELVLVQTLIAQGCDVNASDGDGYTPLMLAARGGHGKICSLLIS SGARVDFKNERSETALLLARKSSGGGGEAAEVILDYKAREMVLEGGRLKKHTRGGKGKPQYKSVEMVPAEGVLRWQKWWWWWVKTSVVCKEAKVGPATKF RWNRRRAADLEEPGLFHVVTTKGKVVHFVCEDGGDEMAELWVRGIKIITREAIFGKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14230			unknown protein		Lus10036990 [exp]	0	1
AT2G48140		EDA4	embryo sac development arrest ...		Lus10006906 [exp]	2.4	0.9373
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	2.6	0.9498
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10025281 [exp]	2.8	0.9433
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	3.7	0.9452
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	6.3	0.9225
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	6.5	0.9438
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	7.1	0.9375
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	8.5	0.9269
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	9.2	0.9303
					Lus10013619 [exp]	9.2	0.8727

Compare expression of checked genes

Lus10036990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.