Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27900 1053 / 0 RNA helicase family protein (.1) AT3G26560 535 / 2e-176 ATP-dependent RNA helicase, putative (.1) AT1G32490 529 / 1e-175 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 528 / 5e-175 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT5G13010 508 / 2e-165 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G47250 473 / 2e-157 RNA helicase family protein (.1) AT3G62310 472 / 2e-157 RNA helicase family protein (.1) AT4G18465 436 / 1e-143 RNA helicase family protein (.1) AT1G26370 418 / 2e-136 RID1 RNA helicase family protein (.1) AT4G16680 397 / 4e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015812 [exp] 1361 / 0 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036783 [exp] 527 / 4e-173 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 503 / 1e-164 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 494 / 1e-161 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10005261 [exp] 446 / 1e-146 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10033690 [exp] 454 / 6e-144 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037067 [exp] 401 / 9e-130 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 399 / 3e-129 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 305 / 1e-95 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057200 [exp] 1128 / 0 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.015G024400 [exp] 536 / 8e-177 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 535 / 4e-176 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 513 / 5e-169 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G172500 [exp] 507 / 1e-164 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 468 / 1e-155 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 462 / 2e-153 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 438 / 2e-144 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 413 / 2e-134 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.016G068900 [exp] 306 / 3e-91 AT2G35920 1474 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10036991 pacid=23171167 polypeptide=Lus10036991 locus=Lus10036991.g ID=Lus10036991.BGIv1.0 annot-version=v1.0 ATGGCGGCGCATCTTCCCATAGTCCAATTCGAGGAGCAAATCATCAGAACTGTTCAAGACAATCGGGTGGTGGTCGTGATCGGAGAGACCGGTTCGGGGA AGAGCACCCAGCTCTCTCAGATGCTCCTCCGCCATGGCTACTCCAAGTCCGGAATCATAGGCGTTACTCAGCCCCGTCGAGTTGCCGCCGTCTCCGTCGC CAGACGAGTTGCTCAGGAACTTGGCGTTAAGCTTGGGGAGGAAGTTGGTTATGCGATTCGGTTTGAGGATAGGACTTCGGACTCGACACGGATTAAGTAC CTTACTGATGGAGTTCTTCTCCGGGAAAGTCTATCTGACCCCGAGCTTAGTCAATATTCGGTTATAATATTGGATGAAGCCCATGAGAGGAGCTTGAACA CGGACATTTTACTGGGACTGGTGAAGCGATTGACGAAAATGCGTGAATGCAAATTGAAAGTTCTGATCACATCTGCAACTCTAGATGGGGAGAAGGTGTC GGAGTTCTTTTCGGAGTCCCCAATTCTGAACGTCCCCGGGAAGCTGTTTCCTGTGGAAGTAGTATACAGCAGGGAGCGTCCCATAAGTTATCTCGAGTCT TGCCTCAGAACAGCTCTTGATATACATCGTAAGGAACCTGAAGGGGATGTGCTAATATTCATGACTGGACAGGATGATATTGAGAAGTTGGTTGCAAAAT TGGAGGAAAAGATTCGAGGCCTAGAGGAAGGTTCCTGTATGGATGCAGTAATCCTTCCTCTTCATGGTTCTTTGCCTCCTGAAATGCAGGTGCGTGTCTT CAGTCCTGCTCCTCCAGATTGTAGGCGATTTATTGTTGCTACCAACATTGCTGAAACTTCTTTGACGGTTGACGGAGTAGTGTATGTTATCGATTCGGGT TATGTAAAGCAAAGGCAGTACAATCCATCAACTGGCATGTATTCTCTTGATGTTGTTCAGATCAGCAAAGTGCAAGCAAACCAGCGTGCAGGAAGAGCAG GAAGGACACGTCCGGGGAAATGCTATAGGTTGTACCCTTCCTCAGTGTATCAAGATGAATTACTTGACGTAACTGTCCCTGAGATACAACGAACTTCACT CGCTGGCACTGTTCTTTACTTGAAATCATTGGACCTTCCAGACATTGACATTTTAAAGTTTGATTTCCTGGATTCACCTTCTGCTGAATCGCTGGAAGAT GCTTTAAAGCAACTTTATCTTATTGATGCTATAGATGAAAACGGAGCCATCACAACTGTAGGACGAACAATGGCTGAACTACCACTAGAGCCATCACTTT CCAGAACATTAATGGAAGCAAACGAGAATGGTTGCTTATCCCAGGCTTTGACTGTTGCTGCTATGTTGTCAGCAGAAACTACATTGCTTCCTAATCGAAG TAGCAAAAACAATGAAAAGAAGAGGAAACAAGAACCTTTAGACCTTCCTGATGGGTCTGGTTTTGGTGATCACATCCAGATGCTACAGATCTACGAGCAG TGGGATGAGTATGACTATGACATCAGGTGGTGCAGAGATCATGGCTTGCAGGAGCGAGGAATGGTGTTTGTTAAAGATGTACGTAAACAGCTGTGTCAAA TAATGCAGAAAATCGCAAAGGGTTCAACAGATGTTAGAGCAACTCGCAGATACAGAGATGGCCAACATGATTGCAAGAATCTAAGGAAGGCCTTGTGTGT AGGCTATGCAAATAAGCTTGCGGAGAAAATGGTTCATCACAATGGCTACCGAACTATAGGTTTCAAACCCCAACTTGTTCAGGTCCACCCATCTTCTGTG CTGAAACCTGACGACGATGGTATGTTCCCAAACTACGTCGTGTACCACGAGCTCATCGCTACCTCTCGTCCGTTCATGCGGAGCATCTGCTGCGTAGAGA TGCGATGTGTCGTCCCGATTCTCAAGAAACTCGAAAAGCTTGACGTCAACAAACTAAGCGGAGGGCTTCATCGCAACGTTGGAGGTAATGAGAAGACCTT AGAGTTGGTGGAGAAGAAGCCTGTTGTTGCTGCAATTCCTGATGATAGCGAGAACAGAATCCTGGCTGCTCGTGAACGGTTTCTTGCTCGAAAAGGTAGC AAATGA
AA sequence Show only first row Show all	>Lus10036991 pacid=23171167 polypeptide=Lus10036991 locus=Lus10036991.g ID=Lus10036991.BGIv1.0 annot-version=v1.0 MAAHLPIVQFEEQIIRTVQDNRVVVVIGETGSGKSTQLSQMLLRHGYSKSGIIGVTQPRRVAAVSVARRVAQELGVKLGEEVGYAIRFEDRTSDSTRIKY LTDGVLLRESLSDPELSQYSVIILDEAHERSLNTDILLGLVKRLTKMRECKLKVLITSATLDGEKVSEFFSESPILNVPGKLFPVEVVYSRERPISYLES CLRTALDIHRKEPEGDVLIFMTGQDDIEKLVAKLEEKIRGLEEGSCMDAVILPLHGSLPPEMQVRVFSPAPPDCRRFIVATNIAETSLTVDGVVYVIDSG YVKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSSVYQDELLDVTVPEIQRTSLAGTVLYLKSLDLPDIDILKFDFLDSPSAESLED ALKQLYLIDAIDENGAITTVGRTMAELPLEPSLSRTLMEANENGCLSQALTVAAMLSAETTLLPNRSSKNNEKKRKQEPLDLPDGSGFGDHIQMLQIYEQ WDEYDYDIRWCRDHGLQERGMVFVKDVRKQLCQIMQKIAKGSTDVRATRRYRDGQHDCKNLRKALCVGYANKLAEKMVHHNGYRTIGFKPQLVQVHPSSV LKPDDDGMFPNYVVYHELIATSRPFMRSICCVEMRCVVPILKKLEKLDVNKLSGGLHRNVGGNEKTLELVEKKPVVAAIPDDSENRILAARERFLARKGS K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27900			RNA helicase family protein (....		Lus10036991 [exp]	0	1
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	8.9	0.7338
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	11.0	0.7396
AT3G58470			nucleic acid binding;methyltra...		Lus10005597 [exp]	12.3	0.6619
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	14.3	0.6909
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	17.7	0.7297
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	18.3	0.7078
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	18.5	0.7046
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042665 [exp]	19.2	0.6827
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	19.7	0.7260
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	24.9	0.7242

Compare expression of checked genes

Lus10036991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.