Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67550 753 / 0 URE urease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015814 [exp] 514 / 3e-172 AT1G67550 857 / 0.0 urease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177900 [exp] 791 / 0 AT1G67550 1345 / 0.0 urease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00449 [flax] [poplar] Urease_alpha Urease alpha-subunit, N-terminal domain CL0034 [flax] [poplar] PF00699 [flax] [poplar] Urease_beta Urease beta subunit CL0034 [flax] [poplar] PF00547 [flax] [poplar] Urease_gamma Urease, gamma subunit CL0034 [flax] [poplar] Amidohydrolase PF01979 [flax] [poplar] Amidohydro_1 Amidohydrolase family
Representative CDS sequence Show only first row Show all	>Lus10036993 pacid=23171290 polypeptide=Lus10036993 locus=Lus10036993.g ID=Lus10036993.BGIv1.0 annot-version=v1.0 ATGAAGCTTTCGCCGAGAGAAGTGGAGAAACTTGCGCTCCACAACGCAGGATTCCTCGCCCAGAAGCGCCTAGCTCGTGGCCTCAAGCTCAATTACACCG AATCCGTTGCTCTTATTGCTTCTCAGATTTTGGAGTTTGTAAGAGATGGTGACAAGAGTGTAGCAGAGCTTATGGATGTTGGGAGACAGCTTTTAGGAAG GAGACAAGTGCTTCCAGCAGTTCCCAATTTGCTTCATTCTGTACAGGTTGAAGGCACTTTTCCTGATGGAACCAAGCTTATAACTGTTCATGATGCTATT GCTTGCGAGAATGGGGATCTCCAGCTGGCTCTGCACGGCTCTTTTCTCCCAGTGCCTTCAACCGACAAGTTCCCCGGAATCGAAAAGGCCGAATTCCCCG GAGAGATAATCTACGGGGAGGGGACCGTAACTCTGAACCTAGGAAGGAAAGCTGTGATCTTGAAAGTTGTTAATACAGGAGACAGGCCGGTTCAGGTTGG CAGCCATTATCATTTCATCGAGACGAATCCTTACTTACTCTTTGACCGGCTGAAGTCACTCGGGATGCGCCTCAACATACCTGCAGGAACGGCTACTCGA TTCGAGCCAGGGGAATGCAAGAGTGTTGTACTTGTTAGCATTGCGGGCAAGAAGGTGATCAGAGGTGGAAATGGCATCGTCGATGGTCCTGTTAGCGATT CCAGTAACGCTGTTGTATTGGAGGTTATAAATAGCAGAGGATTCGGGCATAAAGAAGAAGCGAATGCCAGGGAAGGCACAACCGGGGAGGATCCTGCTTT CACCACCGTCGTTCCTCGCGAGATGTACGCTAACATGTATGGTCCCACAACCGGAGACAAGGTCCGTCTAGGGGACACGAATCTCTACGCCGAGATCGAG AAGGACTTTGCCGTGTTTGGCGATGAATGTGTGTTCGGAGGTGGGAAAGTCATCAGAGATGGAATGGGACAGTCCGCTGGACATCCACCGGCGGAATCTC TCGATACGGTTATAACGAACGCTGTGATCATTGACTACAGTGGAATCTACAAGGCTGACATTGGCATCAAAGGAGGCCACATTGCTGCCATTGGCAAAGC CGGAAACCCTGACGTCATGGATAGTGTTCATGGCGACATGATCATTGGTGTTAACACAGAGGTAATTGCTGGAGAGGGGATGATCATAACCGCAGGAGCG ATCGACTGTCACGTCCACTTCATCTGTCCTCAGTTAGCACATGAAGCAATCTCGAGCGGCATTACAACACTCATTGGTGGTGGAACTGGACCTGCCGACG GCACACGCGCAACTACTTGCACTCCTGCTGCTTCACAAATGAAGCTTATGCTGCAATCCACTGATAACATGCCTCTCAATTTCGGCTTCACTGGAAAGGG TAATGCCGCGAAACCTGAAGAGCTCCACGACATAATTAAAGCCGGGGCAATGGGACTGAAACTGCATGAAGACTGGGGAACTACTCCAGCTGCAATAGAC AATTGCTTAGCTGTAGCGGATGAATACGATATCCAGATGGTTTGCCATCACCTTGACAAGGACATACCCGAAGACGTAGCTTTCGCTGAATCGAGAATTC GAGCTGAGACAATTGCTGCAGAGGACTTATTGCATGATATGGGGGCAATCAGCATCATATCTTCTGATTCACAAGCCATGGGCCGGATCGCAGAGGTCAT AAGCAGAACATGGCAGACTGCCCACAAGATGAAATCACAGAGGAGAACGATTGACCCTGCTGGATCAGACAACGATAACTTGCGAATCAAGCGATATGTT GCTAAGTATACCATAAACCCAGCCATAGCAAATGGAGTTGCAGAACACATTGGTTCAGTCGAGGTCGGAAAATGGGCTGATCTTGTTCTGTGGCAACCCG CATTCTTCGGAGCTAAACCGGAGATGGTGATCAAAGGTGGTGTCATTGCATGGGCTAACATGGGTGACCCGAATGCAAGCATCCCAACACCTGAACCGGT GATCTCGAGGCCAATGTTTGGAGCATTTGGCAAGGCCGGAAGTGAAAACTCCATTGCCTTCGTCAGCAAGGCAGCCTTAGATAATGGAGTCAAAGCCTCA TACGGGCTTGACAAGCGAGTCCAGGCCGTGGGGAACGTGAGGAAGCTAACGAAACTCGACATGAAGCTCAACGATTCACTCCCGGAAATTACAGTCGATC CCGAGACTTACACTGTCACAGCTAATGGTGAAGTTTTAACTTGCCCTGCTGCCACTACAGTTCCTCTTTCAAGGAACTACTTCATGTTCTAG
AA sequence Show only first row Show all	>Lus10036993 pacid=23171290 polypeptide=Lus10036993 locus=Lus10036993.g ID=Lus10036993.BGIv1.0 annot-version=v1.0 MKLSPREVEKLALHNAGFLAQKRLARGLKLNYTESVALIASQILEFVRDGDKSVAELMDVGRQLLGRRQVLPAVPNLLHSVQVEGTFPDGTKLITVHDAI ACENGDLQLALHGSFLPVPSTDKFPGIEKAEFPGEIIYGEGTVTLNLGRKAVILKVVNTGDRPVQVGSHYHFIETNPYLLFDRLKSLGMRLNIPAGTATR FEPGECKSVVLVSIAGKKVIRGGNGIVDGPVSDSSNAVVLEVINSRGFGHKEEANAREGTTGEDPAFTTVVPREMYANMYGPTTGDKVRLGDTNLYAEIE KDFAVFGDECVFGGGKVIRDGMGQSAGHPPAESLDTVITNAVIIDYSGIYKADIGIKGGHIAAIGKAGNPDVMDSVHGDMIIGVNTEVIAGEGMIITAGA IDCHVHFICPQLAHEAISSGITTLIGGGTGPADGTRATTCTPAASQMKLMLQSTDNMPLNFGFTGKGNAAKPEELHDIIKAGAMGLKLHEDWGTTPAAID NCLAVADEYDIQMVCHHLDKDIPEDVAFAESRIRAETIAAEDLLHDMGAISIISSDSQAMGRIAEVISRTWQTAHKMKSQRRTIDPAGSDNDNLRIKRYV AKYTINPAIANGVAEHIGSVEVGKWADLVLWQPAFFGAKPEMVIKGGVIAWANMGDPNASIPTPEPVISRPMFGAFGKAGSENSIAFVSKAALDNGVKAS YGLDKRVQAVGNVRKLTKLDMKLNDSLPEITVDPETYTVTANGEVLTCPAATTVPLSRNYFMF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	0	1
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	1.0	0.9302
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	3.2	0.8943
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	6.5	0.8703
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	7.3	0.9094
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	8.9	0.8742
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	11.5	0.9021
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	12.0	0.8721
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	13.9	0.8440
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	14.3	0.8929
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	14.3	0.8320

Compare expression of checked genes

Lus10036993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.