Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 508 / 7e-176 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 455 / 3e-155 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 454 / 4e-155 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 454 / 9e-155 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 439 / 3e-149 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 404 / 2e-135 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 370 / 5e-122 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 326 / 5e-105 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 325 / 2e-104 4CL5 4-coumarate:CoA ligase 5 (.1) AT3G21240 321 / 5e-103 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002791 [exp] 479 / 2e-164 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 439 / 1e-148 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 431 / 4e-143 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 417 / 3e-140 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10013831 [exp] 397 / 2e-132 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 396 / 3e-132 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 393 / 1e-130 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 393 / 1e-130 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10016135 [exp] 380 / 7e-126 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057000 [exp] 641 / 0 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 561 / 0 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 514 / 1e-178 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 481 / 1e-165 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 476 / 3e-163 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 474 / 6e-163 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 449 / 4e-153 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 449 / 8e-153 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 423 / 1e-142 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 416 / 1e-139 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10036994 pacid=23171204 polypeptide=Lus10036994 locus=Lus10036994.g ID=Lus10036994.BGIv1.0 annot-version=v1.0 ATGCCAATTGATCCCAGAAGCGGCTTCTGTTCAGAGACCACGGCCTACCACAGTCTCAGGCCCCCCGTTCCGCCGTCGACATCTGCAGCATCACTCTCCT TCGTCGATTTCATCTTCTACCTCCTCAACTCCTCCCCTCCGCCACCATCAACCGCTTCCGCTCTCGTCGACGCCGTTACCGGCCGCCGCATTTCTTTTGC GGAACTCGCTCCGCGTGTCAGCACGCTAGCCTCTTCCCTCCGCCGGGACCTCGGGCTGAGGAAGGGAGACGCGGCTTTGATCCTCTCTTCCAACTCAATC GACATCCCGATCCTTTACCTCTCCCTCCTGTCCATCGGCGCCGTCGTATCTCCGGCCAATCCGGCGAGCTCGAAGCAGGAGATTCTCCACCTCCTCAGCT TGTCCAAACCTAGAATCGCATTCGCGACATCCTCTCTAGCTCGTAAAATCCCCTCCGTCGTGAGGACAGTTCTAATCGACTCGATCGAGTTCGAATCCCT AGCGATCTCCACAGAATCCGGATACGGCGAGCTCAACAAAGAGCCGGTGACCATCTACCAATCAGATCCGGCAGCGATCCTCTACTCATCCGGAACGACT GGAAGAACCAAAGGAGTGCTGTTAACTCACGGTAACTTCACATCAGTGGTGGCCGCTGTTCACGCCAGTCGGCCGGAAAGAAAATCTTCTCAGCCTGCGG CGGTATGCCTATCGACGGTGCCGTTTTTCCACATTTACGGATTCGCTCTGTGTCTCCGGACGGTTGCCTTCGGAGAAACGCTGGTGTCGATGGAGAGAAT AGAATTGAAGAAGATGCTGAAAGCGATCCAGGAACATCGTGTTAGCCACGTGGCGGCAGCGCCACCGCTCGTAATTTCTCTGATCAAAGAAGATCGGAAA GTGATGGCCGGCTACGATTTGAGCTCTCTGGAAGTTGTAGCCTGCGGCGGCGCTCCACTGGGTAGAGATGCAGCCGCGCTCTTTGCCAAGCTGTTTCCAA GTGCTCTGCTCGTCCAGGCTTATGGGTTGACGGAAACGACGGGGGGGATGTTTACGACGGTGGGATCAACGGAGAGTAAGGTGGGAGGCGCAACAGGGAA GCTATGTCCCAGCTGTGAAGCGAAAATTGTTGATCCTGAAACTGGAATTTCGCTGCCTCCTGGTAAAGCTGGAGAGCTTTGGGTGAGAGGGCCAACCATT ATGAAGGGCTATGTTGGCGACGAGGAAGCAACTGTTAGAGCTTTGGATTCGGAAGGATGGCTGAGAACTGGAGACCTCTGCTACATCGACGATGAAGGGT TCCTGTTCGTGGTCGACAGGATTAAGGAACTGATCAAATGCAGAGGCTATCAGGTAGCTCCAGCTGAGCTTGAGCATCTGCTTCAGTCACATCCGGAAAT TCTCGAGGCAGCAGTCGTCCCGTTTCCTGATGAAATAGCAGGCCAAGTTCCGGTAGCGTTCGTGGCAAGACAGAATGGAAGCACCGTGAGCGAATCAGAT ATCAAGAGTTTTGTAGCGAATCAGGTTGCACCATACAAGAGGATACGTAGAGTATTGTTCATCCCATCCTTACCAAAGAATGCACAAGGCAAGATTCTCA GGAAAGACTTGACAAAGCTTGTCATGATGTCAGCAGCCAAGCTATAG
AA sequence Show only first row Show all	>Lus10036994 pacid=23171204 polypeptide=Lus10036994 locus=Lus10036994.g ID=Lus10036994.BGIv1.0 annot-version=v1.0 MPIDPRSGFCSETTAYHSLRPPVPPSTSAASLSFVDFIFYLLNSSPPPPSTASALVDAVTGRRISFAELAPRVSTLASSLRRDLGLRKGDAALILSSNSI DIPILYLSLLSIGAVVSPANPASSKQEILHLLSLSKPRIAFATSSLARKIPSVVRTVLIDSIEFESLAISTESGYGELNKEPVTIYQSDPAAILYSSGTT GRTKGVLLTHGNFTSVVAAVHASRPERKSSQPAAVCLSTVPFFHIYGFALCLRTVAFGETLVSMERIELKKMLKAIQEHRVSHVAAAPPLVISLIKEDRK VMAGYDLSSLEVVACGGAPLGRDAAALFAKLFPSALLVQAYGLTETTGGMFTTVGSTESKVGGATGKLCPSCEAKIVDPETGISLPPGKAGELWVRGPTI MKGYVGDEEATVRALDSEGWLRTGDLCYIDDEGFLFVVDRIKELIKCRGYQVAPAELEHLLQSHPEILEAAVVPFPDEIAGQVPVAFVARQNGSTVSESD IKSFVANQVAPYKRIRRVLFIPSLPKNAQGKILRKDLTKLVMMSAAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	0	1
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	1.7	0.8786
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	2.0	0.8742
AT5G48630			Cyclin family protein (.1.2)		Lus10002354 [exp]	2.6	0.8542
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	4.9	0.8472
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	6.3	0.8494
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027697 [exp]	9.0	0.8515
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	9.5	0.8744
AT5G42570			B-cell receptor-associated 31-...		Lus10031546 [exp]	9.5	0.8451
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	9.6	0.8747
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	10.2	0.8531

Compare expression of checked genes

Lus10036994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.