Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67580 822 / 0 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G63370 489 / 1e-166 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT5G64960 297 / 5e-92 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT5G10270 296 / 2e-91 CDKC;1 cyclin-dependent kinase C;1 (.1) AT3G48750 278 / 1e-87 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G20930 278 / 3e-87 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 266 / 1e-82 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G18040 266 / 1e-81 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 262 / 5e-80 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 256 / 3e-78 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015816 [exp] 1295 / 0 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 303 / 4e-94 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 300 / 6e-93 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 296 / 8e-87 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10023050 [exp] 259 / 4e-78 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10038755 [exp] 251 / 6e-78 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10042588 [exp] 261 / 7e-78 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10032422 [exp] 258 / 1e-77 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10040593 [exp] 251 / 4e-77 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056900 [exp] 940 / 0 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 927 / 0 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 577 / 0 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G092100 [exp] 576 / 0 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 295 / 7e-91 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.004G133500 [exp] 286 / 2e-90 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.012G003700 [exp] 280 / 3e-85 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.002G003400 [exp] 264 / 1e-81 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.001G088000 [exp] 265 / 2e-80 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.005G257500 [exp] 257 / 2e-79 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036995 pacid=23171084 polypeptide=Lus10036995 locus=Lus10036995.g ID=Lus10036995.BGIv1.0 annot-version=v1.0 ATGGCGGCTGGGAGGCCTGGAGTGTACCGTGATTACGAGTTAAGGGAACGGGAGGCGGGATTTGAGCTGTCAAGGAAGGATTCGGGGTACTCTAAGGAGA GGTTTGATAGGATTGGGAACGGTAATCGAGAATATGATCGTGATCGTGTGAGAGTTCGTGACTTGAAGGATAGGTCTAATGGTAGAGTTAGGCAGAGAGA TACGAAGGAGAGGGAAGTTGTCAACGGTGTGAACCGTTGTTCATCTAGCAGGAGTAATTCAGGCAGTAGTGGTAGTGGTGGCCGTGAAGGTGTCAGGGGA CCCCGTCGGTGTGACTCTGCAGCTAAGGCAGTGGATAAAGAGCCTGGCGAATTGTCTAGTGATAGTGGGTCTGATGGTGGGATCGAGTCGGGATCACAGG TCTATGAAGACAGGGAGGTTTCAAAGGTGGTAGAGAATGGGGAAACAAAAGCTCATGTGGAGAAGAAGAGGAAGTTTTCTCCTATTGTGTGGGATAGGGA TGCTAATGCAGTGAGTAATTCATCAGAAACAAGGGTTCCGAAGGAGGGGGTAACAGCTCTTCCTCCTCCACCTCCCCTTCCCATCCCTAAGCTACCACGT GAATTATCTGTTGCTAATGGAGAGGTATCTGTGGGTATATCGCCCGCCAGAAGTTATAAGAATTGCAACTCGCAGTCATCGTCTCCTGTCAAGGATCCAT ACGCTAAACCTTCAGGCGACCACGAGTCTCATGTAGAACCTGATGCTCCGATGTTAATGTCGGATGATCCCAAACAGTATCAGGGCCTCCAGCCAGGGGA TTTAGAAGATGAAGATTATGTCCCAACTCGGCATATATCATCCTCAAGATGGGCAGCTGGGAACAACTCTCCAGTTGATGAAGGTGAAATTGTGGAAGAT CAGGAAATGCCTAGAAGAAGGAAGAAGGTGCCGTATCCAGACTCATCTGATTCCAAAGTGCGAAGTAAGTCGGTGACTCCTGAGCTTGGCGACCTGAAGA GAGAAGGGTCTGATGGAGCCAATGGTAGGTCATCAGCTTCTGATGAACCTGGATCTCGTCCTAGATCTTCAAGTAGAGACGAGTATCCTAATAATGATTC TGAGAGGGATGAATATATGGAGGTTGACGGGGATCGAGAGTACAAGGATAGAAACAATGGCCACTTAGATACTGATTCGGACGATGATGACAGTTCTAGA GACACACCAGAACCAGCTGGTCCTCCTCAGAGAAGTATAAGCATGCTTAGGGGCTGTAGGAGTGTTGATGAGTTTGAGAGACTTAATAAGATAGATGAAG GTACATATGGTGTTGTATTTAGAGCTAAAGATAAGAAAAGTGGCGAAGTTGTGGCCTTGAAAAAGGTAAAAATGGAGAAAGAACGAGAAGGTTTTCCTCT TACTTCTTTGAGGGAGATAAACATTCTCCTTTCCTTTCATCATCCTTCTATTGTTGACGTCAAAGAGGTTGTGGTAGGTAGTAGTCTGGATAGCATTTTT ATGGTGATGGAGTATATGGAGCATGATCTGAAAGGACTCATGGAGTCAATGAAGCAGCCATTTAGTCAGAGTGAAGTTAAATGCTTAATGTTGCAGCTTT TGGAGGGTACAAAGTATTTGCATGATAACTGGGTGCTTCATCGGGATCTGAAGACGTCAAATATACTACTAAACAACCGGGGTGAGTTGAAGATCTGTGA TTTTGGGTTGGCTCGTCAATATGGGAGCCCATTGAAGCCATATACTCACATGGTGGTTACTCTTTGGTACAGGGCGCCTGAACTTCTTCTTGGAGCTGAG CAGTATTCAACAGCAATTGACATGTGGTCGTTGGGCTGTATTATGGCTGAAATGCTATCAAAACAACCTTTGTTCAATGGCAAAACAGAGGTTGATCAAC TTGACAAGATTTTCCGGATCCTTGGTACTCCAAATGAAACCATCTGGCCTGGGTTTTCGAAGCTACCAAGAGTCAAGGTTAATTTCGTTAAGCATCAGTA TAACCTGCTACGTAAAAAGTTTCCAGCAACATCTTTCACTGGATCTCCAGTGCTCTCTGATGCCGGGTTTGATCTGTTAAACAAACTGCTTACCTATGAC CCTGAGAAGCGAATAACTGTTGATGCTGCACTAAATCACGAGTGGTTTCGTGAAGTACCTCTTCCTAAGTCCAAAGATTTCATGCCAACATTCCCTGCTC AACATGCACAAGACAGACGTCTACGGAGAGTAATGAAGAGCCCAGATCCACTGGAAGAACAACGTCGGAAAGAGCTGCGGCAAGCAGAATTAGGAACTGG CGGGTTATTTGGCTAG
AA sequence Show only first row Show all	>Lus10036995 pacid=23171084 polypeptide=Lus10036995 locus=Lus10036995.g ID=Lus10036995.BGIv1.0 annot-version=v1.0 MAAGRPGVYRDYELREREAGFELSRKDSGYSKERFDRIGNGNREYDRDRVRVRDLKDRSNGRVRQRDTKEREVVNGVNRCSSSRSNSGSSGSGGREGVRG PRRCDSAAKAVDKEPGELSSDSGSDGGIESGSQVYEDREVSKVVENGETKAHVEKKRKFSPIVWDRDANAVSNSSETRVPKEGVTALPPPPPLPIPKLPR ELSVANGEVSVGISPARSYKNCNSQSSSPVKDPYAKPSGDHESHVEPDAPMLMSDDPKQYQGLQPGDLEDEDYVPTRHISSSRWAAGNNSPVDEGEIVED QEMPRRRKKVPYPDSSDSKVRSKSVTPELGDLKREGSDGANGRSSASDEPGSRPRSSSRDEYPNNDSERDEYMEVDGDREYKDRNNGHLDTDSDDDDSSR DTPEPAGPPQRSISMLRGCRSVDEFERLNKIDEGTYGVVFRAKDKKSGEVVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIF MVMEYMEHDLKGLMESMKQPFSQSEVKCLMLQLLEGTKYLHDNWVLHRDLKTSNILLNNRGELKICDFGLARQYGSPLKPYTHMVVTLWYRAPELLLGAE QYSTAIDMWSLGCIMAEMLSKQPLFNGKTEVDQLDKIFRILGTPNETIWPGFSKLPRVKVNFVKHQYNLLRKKFPATSFTGSPVLSDAGFDLLNKLLTYD PEKRITVDAALNHEWFREVPLPKSKDFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELRQAELGTGGLFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	0	1
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	1.4	0.9494
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	1.7	0.9376
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	2.8	0.9375
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	2.8	0.9475
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	4.5	0.9355
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	4.6	0.9325
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	4.9	0.9312
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	6.0	0.9326
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10027124 [exp]	6.9	0.9170
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	7.1	0.9247

Compare expression of checked genes

Lus10036995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.