Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67590 95 / 3e-23 Remorin family protein (.1.2) AT1G30320 40 / 0.0006 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015817 [exp] 186 / 1e-57 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10038522 [exp] 44 / 2e-05 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10023284 [exp] 44 / 6e-05 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10026302 [exp] 41 / 0.0002 AT3G57540 209 / 1e-67 Remorin family protein (.1) Lus10042367 [exp] 40 / 0.0005 AT3G57540 153 / 5e-46 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G178300 [exp] 103 / 2e-26 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 99 / 1e-24 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.008G144300 [exp] 58 / 5e-10 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.001G358600 [exp] 44 / 3e-05 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.016G054400 [exp] 42 / 0.0001 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.006G053200 [exp] 42 / 0.0002 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.010G098000 [exp] 40 / 0.0006 AT2G02170 434 / 2e-148 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10036996 pacid=23171001 polypeptide=Lus10036996 locus=Lus10036996.g ID=Lus10036996.BGIv1.0 annot-version=v1.0 ATGACTCCGATTGCTAGTCAGGAGCCGTCAAGGTCTGCTACGCCGATCAGGGCGACAACGCCGGCGGCGAGGAGCCCGATGTCGTCGGGGTCGACCACGC CGGTTAGAGGAGCGGCGGGGCACCACCACCACGGTGGTGGTGGTGTTGTTGTTCAGGATGGGTACCAAATTCCGGCGAGCAGCGGCGGTGGCGGAGGAAG GGTGAATGGCGGCGAAATGAATAGTGTGATCAAAATGGAGGATTCCGGTAACGGCGGGAATCCGGTGAATCCGTTGGAAGCAAGAGCTGCCGCATGGGAT GAAGCTGAGCGTGCTAAATACATGGCAAGCCTTGATCATGGTGCCATGAAACCGTGGTGCATTGACCACGGGTTAGTTTCAGTGAAAGCGGAGAGGATGA AGGCTCGAGCACAAGAGAAGCTGGCGAACAAGTTGGCAACCACGAAGAGAGTGGCCGAGGAGAAGCGAGCAAATGCGGAGGCGAAACTGAACGAGAAGGA CGTGAGGACATCGGAGAGGGCTGATTACATTAGAAGGAACGGTCATTTGCCTTCTTCTTTCTCCTTCAAACTCCCTTCTCTTTGCTGGTGA
AA sequence Show only first row Show all	>Lus10036996 pacid=23171001 polypeptide=Lus10036996 locus=Lus10036996.g ID=Lus10036996.BGIv1.0 annot-version=v1.0 MTPIASQEPSRSATPIRATTPAARSPMSSGSTTPVRGAAGHHHHGGGGVVVQDGYQIPASSGGGGGRVNGGEMNSVIKMEDSGNGGNPVNPLEARAAAWD EAERAKYMASLDHGAMKPWCIDHGLVSVKAERMKARAQEKLANKLATTKRVAEEKRANAEAKLNEKDVRTSERADYIRRNGHLPSSFSFKLPSLCW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	1.4	0.9148
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	2.0	0.8956
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	2.8	0.8747
AT4G39380			unknown protein		Lus10020841 [exp]	3.5	0.8378
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	3.9	0.8856
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10012698 [exp]	4.6	0.7945
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	4.6	0.8372
AT5G50090			unknown protein		Lus10042139 [exp]	5.0	0.7878
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10022539 [exp]	5.7	0.8189
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	6.0	0.8169

Compare expression of checked genes

Lus10036996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.