Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08530 630 / 0 CI51 51 kDa subunit of complex I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015808 [exp] 474 / 3e-167 AT5G08530 440 / 6e-153 51 kDa subunit of complex I (.1) Lus10015807 [exp] 229 / 8e-75 AT5G08530 216 / 1e-69 51 kDa subunit of complex I (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057400 [exp] 654 / 0 AT5G08530 866 / 0.0 51 kDa subunit of complex I (.1) Potri.008G177801 [exp] 153 / 8e-46 AT5G08530 153 / 7e-46 51 kDa subunit of complex I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10589 [flax] [poplar] NADH_4Fe-4S NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CL0105 [flax] [poplar] Hybrid PF01512 [flax] [poplar] Complex1_51K Respiratory-chain NADH dehydrogenase 51 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10036999 pacid=23171151 polypeptide=Lus10036999 locus=Lus10036999.g ID=Lus10036999.BGIv1.0 annot-version=v1.0 ATGCAAAGTGCAGCTTTGGTTCGGCGTCATGCTGACAAATTGGGTGTAGGATTTAGATCGTTGAGCACCCAAGCTGCGAGCAATTCTGGGGCTCCACAGC CACCACCACCACCACCACCTCCTGAGAAGACTCATTTTGGTGGCCTGAGTGATGAGGATCGGATATTCACTAACTTGTATGGACTGCACGATCCATTTCT TAAGGGTGCAATGAAAAGGGGTGATTGGTATAGAACCAAGGACTTGGTTCTGAAAGGTACTGATTGGATTGTGAATGAAGTGAAGAAGTCTGGTCTCCGA GGACGTGGTGGAGCTGGTTTTCCCTCGGGACTCAAATGGTCATTCATGCCTAAGGTTTCAGATGGTCGTCCTTCCTATCTTGTGGTCAATGCTGATGAAA GTGAACCCGGTACTTGCAAAGACAGAGAAATCATGCGTCACGATCCCCACAAGCTGTTGGAAGGCTGCTTGATTGCTGGGGTAGGAATGCGAGCTAGTGC TGCGTATATCTACATTAGGGGTGAGTACGTCAATGAACGGAATAACCTTGAGATAGCAAGGAAAGAAGCTTACGCAGCTGGGCTTCTAGGCAAGAATGCC TGTGGATCCGGCTACGATTTTGATGTTCATATCCACTATGGTGCTGGTGCTTACATTTGCGGGGAAGAGACTGCACTTTTGGAAAGCCTTGAAGGAAAGC AAGGCAAGCCAAGGTTGAAGCCTCCTTTCCCTGCCAATGCTGGATTGTACGGCTGGTCCACAACAGTCACAAATGGGGGAAAAGTTGCTGTATATCCCAC CATATTCCCAGGAGGTTCTTCAGTCCCGTTACTGCCCAAAAACATATGCGACGATGTACTGATGGACTATGATGCACTTAAGGCCGTCACATCAGGATTG GGAACCGCAGCTGTGATCGTGATGGACAAATCGACCGATATCGTCGATGCGATCGCGAGGTTGTCTTACTTCTACAAGCACGAGAGCTGCGGGCAGTGCA CTCCGTGCAGAGAGGGCACCCCCTGGCTGTGGATGATGATGGAAAGATTGAAGGTCGGAAATGCTAAGTTGGAAGAGATCGATATGCTTCAGGAGCTCAC CAAGCAGATTGAAGGGCATACGATTTGTGCTCTTGGTGATGCCGCAGCTTGGCCTGTACAGGGTCTTATTAGACATTTCAGGCCAGAGCTTGAGAGAAGG ATCAGGGAGCGTGCCGACAGGGAGTTGTTGGAGGCTGCTGCGTAA
AA sequence Show only first row Show all	>Lus10036999 pacid=23171151 polypeptide=Lus10036999 locus=Lus10036999.g ID=Lus10036999.BGIv1.0 annot-version=v1.0 MQSAALVRRHADKLGVGFRSLSTQAASNSGAPQPPPPPPPPEKTHFGGLSDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLR GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERNNLEIARKEAYAAGLLGKNA CGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGWSTTVTNGGKVAVYPTIFPGGSSVPLLPKNICDDVLMDYDALKAVTSGL GTAAVIVMDKSTDIVDAIARLSYFYKHESCGQCTPCREGTPWLWMMMERLKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELERR IRERADRELLEAAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	0	1
AT3G58050			unknown protein		Lus10021073 [exp]	1.0	0.9245
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10028374 [exp]	2.8	0.9055
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	3.5	0.9239
AT3G08780			unknown protein		Lus10014237 [exp]	5.9	0.9068
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	6.3	0.9203
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	6.6	0.9244
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10025466 [exp]	8.0	0.8716
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	8.1	0.9099
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	8.9	0.9022
AT5G11280			unknown protein		Lus10002030 [exp]	9.2	0.9154

Compare expression of checked genes

Lus10036999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.