Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43230 555 / 0 unknown protein AT3G01810 527 / 2e-171 unknown protein AT2G42320 474 / 2e-154 nucleolar protein gar2-related (.1.2) AT3G57780 467 / 9e-152 unknown protein AT5G06930 360 / 1e-110 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015805 [exp] 989 / 0 AT3G01810 160 / 5e-41 unknown protein Lus10015804 [exp] 635 / 0 AT5G43230 371 / 2e-122 unknown protein Lus10041590 [exp] 542 / 2e-176 AT3G01810 603 / 0.0 unknown protein Lus10022341 [exp] 533 / 8e-173 AT3G01810 605 / 0.0 unknown protein Lus10040502 [exp] 483 / 8e-157 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2) Lus10011304 [exp] 481 / 3e-156 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G177500 [exp] 941 / 0 AT5G43230 565 / 0.0 unknown protein Potri.010G057700 [exp] 776 / 0 AT5G43230 560 / 0.0 unknown protein Potri.001G333200 [exp] 560 / 0 AT3G01810 652 / 0.0 unknown protein Potri.016G051500 [exp] 499 / 4e-162 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.006G056800 [exp] 490 / 8e-159 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037001 pacid=23171110 polypeptide=Lus10037001 locus=Lus10037001.g ID=Lus10037001.BGIv1.0 annot-version=v1.0 ATGGTTCTAGGGTTAAGATCAAAGCACAAGAGAGGTGCTTCTATCCAAGTTGATTACCTACTCCAAGTTCAAGAGATCAGTCCATGGCAACCATCACAGT CTGCCAAACCTTCATCAGCATCATCTCTGGTGCTGCAATGGGAGAATGGTGATCAGAGCTATGGATCATTGGTCTGTGGTGTTGTCGAAGGGAAAGTAGA ATCCAGCGACCCTTTCAGGCTTTCAACCACATTATGTAAAGAAACATCTAAGAAGGGAGGAGACAGTTTCACCAAGAATTTGTTGGAGTTTTACTTGTTT GAGCAGCCTCGAAAAGACAAGTCGAATAAAGGTCACCAGTTGGGATCGGCTGTCGTAAATCTTGCAGACTATGGAATCGTTAACGAGGGGATCAAAGTTA GTGCTCCGGTGAGCTTGAAGAAGAGCTCGAAGAGCGCCCCTCAGCCGATTCTATATGTCAGTATTCAGCCGCTTGAGAGGGATAGTAGTAACACTAGTTT GTCGAAAGAGGCGTCGTTGGATAAGGATGTGATGAGTGAGTTTGTTTCGGAAGTGACGAATGATTATGAAGAAGAGGAGATTGCTTCGTTTACAGATGAT GATGTTGACGAGGACGATGTTTCTGGGAATTCCTCGAGGACGGTTTCCTCCTCCATTTTGGATTCTTCTCGTAGAGCTTCCCCTAGTCAATCCGATAAGA ATGTAGCAGCATCTGTGATCTCTAATACGAGAAGAGCTAACGAGAGTCCTGTTCTTCCCTCGAACATAACAGCTTCACCAGTGATTCGAGCAGATGAGCC AATTCAGGTCGAGAAGACTTCGAATCGATCTAGCATTGATGAATACCAAACCGCTACTCAATCTGATAAGGTCCTTTCATCCCTTCAGGAGCAAGTTCAG GTGGAGAAAACTACGAATCGTCCTAGCATTGACGAATACCAAACCGTTAAAGAACCTGATGCAAAAGATCGGCTTGGGGAGGCAAAATTTCCCGCTTTAC CAGATGGTGATCATGTTGTAAATAAAGTAAATGGCCAGGAGATTGAAGAGAAACTTCATGGTGAAGTGCGTCGAGATGCTACGAGAAACCAACTGCCTTT GAGGAGTAACACCATTTCGTCGAACAGGCATGTGGTTGGAGGAGCTCAGGGCAATACAAGAAGAGATAAACTAAAACAGTTAAAATCGATTCAGATACAG CATGCTGCTGCATCTGAGAGTGAAAGGCCATTGGGGAATGGCCAGTCTACAGAGAGAGTGAAGAGACATGAAGTTGCTGAAAGAGTTAGTAGAGGTGGAA TTATTGCTGATCAAGGAGGTCAAAAGGAAGAAAAACCGAACAGCTCCTCTCTTGTTGAAAACAGTTCCAAAATGAGATCTGAATCTGACAGTGAAAGGCC TTTGGGAAATGGCCATTCTACAGAGAGAGAGAAAAAACTTGAAGCTACTGAAAAATCAAACAGTTCCTCTGTCGAGAACAACGTCAAAGTAAGATCCGAA GCTGATATGGTGGTGAAGAAGGAGGAACCGAGCAAAGTTACTAGTTCCGACAGTGTCCTTAAGGCAGCTGGTCCCAAGAACGAGAACTCAACTGTCAAGA GCCCTCCTGCACAAAGAACAAAGAGGGTTGATCCTTCGAAAAATGCAAAAAATGGAGGCATGAGCCACTCGCCAAGTGGACGAGAAGAAACCAAGAGCGT TTCGGGGAACAAAGTTGAAATGCTTGAAGAAGAGTTGATGGAAACTGCTGCTCTTGAGATTGGGCTCTATTCGGTCGTAGCTGAGCATGGGAGCTCAGCA ACCAAGGTTCATGCTCCAGCAAGGCGGCTTTCGAGATTCTATCTTCATGCTTGCAAGGCAAGGAATCAGGCTAAGAGGGCAAATTCAGCAAGAGCTATCA CTTCCGGCTTGATCTTGGTTTCTAAAGCATGTGGAAATGATGTGCCAAGGTTAACTTTCTGGTTGTCGAATTCGATCGTCCTGAGATCAATAGTCAGTCA GGCTGTCGAGAAACTAAACCGTGGCCCCAGGAGCTCTCCTTCCAAACATTCGAAACCTACTATCTCTGACGAATGGGAGAATCCTCGAACTTTTGTTATC GCACTGGAAAAGGTCGAAGCATGGATCTTCTCCCGTATAGTCGAGTCAGTTTGGTGGCAGACCCTTACCCCACATATGCAGTCTACAGCAGTCAAGGGCT CCAGCTCAAAGAAGGCTCACGTTCATGCTCGAAAGCATGGCTTAGGTGATCAAGAACAGGGAAATTTCGCCATCGATCTATGGCAAAAGGCATTCAAAGA TGCATGTGAAAGGCTATGTCCTATCAGAGCTGGCGGCCATGATTGTGGCTGTTTGCACGTTCTGGCTAGACTGGTAATGGAACAGTTGGTAGCTAGATTA GATGTGGCTATGTTCAACGCTGTTCTTCGCGAATCGGCTGACGAAATGCCAACAGATCCCGTTTCAGACCCCATTAGTGATCCTAAGGTCCTTCCCATAC CAGCTGGGAAATCAAGCTTTGGAGCTGGTGCACAACTTAAGAATGCCGTTGGCAGCTGGTCCAGATGGCTAACCGATTTATTCGGTATCGACGATTGCGA GTCTCCAGAAGACAATGACACACCTTTCAAGATCTTCCATCTGTTGAATGCATTGAGTGATCTCATGATGCTCCCGTTCGAAATGCTCGCTGACCGGTCG ACCCGAAAAGAAGTCTGCCCCATGTTCGGGCCTCCGTTGATCAGGCACATTCTATGCAATTTCGTCCCAGACGAATTCAACCCAGACCCCACGCAAAATT CGATCCTCGATTCCCTAGATTCAGAGGACGTTGCCGAACCAGAGGAGGAAGAAACGCTAACTAGCTTCCCATGCACGGCAAGAGCGACAATTTACTTGCC ACCCAAGGCAGCTTCAATCGCAAAAATCATAGGAGGAGGTGACGTTGGAGGACAAAATAGCAGCAGTGCGTTGCAGACGAGCGGTTCAACCCTGCTGCGA AAGTCATACACGAGCGACGACGAGCTTGAAGAGCTAGATTCTCCTTTGAACTCAATTGTAGCCGTTGATAAGCTCGCCGCAGCGTCGTCTTCTAATTCTC CATCTTTGACAGGAAAGGGTGGCCGGAAAGTTGTTAGGTATCAGTTACTCAGAGAAGTGTGGAAAGATGGCCAGTGA
AA sequence Show only first row Show all	>Lus10037001 pacid=23171110 polypeptide=Lus10037001 locus=Lus10037001.g ID=Lus10037001.BGIv1.0 annot-version=v1.0 MVLGLRSKHKRGASIQVDYLLQVQEISPWQPSQSAKPSSASSLVLQWENGDQSYGSLVCGVVEGKVESSDPFRLSTTLCKETSKKGGDSFTKNLLEFYLF EQPRKDKSNKGHQLGSAVVNLADYGIVNEGIKVSAPVSLKKSSKSAPQPILYVSIQPLERDSSNTSLSKEASLDKDVMSEFVSEVTNDYEEEEIASFTDD DVDEDDVSGNSSRTVSSSILDSSRRASPSQSDKNVAASVISNTRRANESPVLPSNITASPVIRADEPIQVEKTSNRSSIDEYQTATQSDKVLSSLQEQVQ VEKTTNRPSIDEYQTVKEPDAKDRLGEAKFPALPDGDHVVNKVNGQEIEEKLHGEVRRDATRNQLPLRSNTISSNRHVVGGAQGNTRRDKLKQLKSIQIQ HAAASESERPLGNGQSTERVKRHEVAERVSRGGIIADQGGQKEEKPNSSSLVENSSKMRSESDSERPLGNGHSTEREKKLEATEKSNSSSVENNVKVRSE ADMVVKKEEPSKVTSSDSVLKAAGPKNENSTVKSPPAQRTKRVDPSKNAKNGGMSHSPSGREETKSVSGNKVEMLEEELMETAALEIGLYSVVAEHGSSA TKVHAPARRLSRFYLHACKARNQAKRANSARAITSGLILVSKACGNDVPRLTFWLSNSIVLRSIVSQAVEKLNRGPRSSPSKHSKPTISDEWENPRTFVI ALEKVEAWIFSRIVESVWWQTLTPHMQSTAVKGSSSKKAHVHARKHGLGDQEQGNFAIDLWQKAFKDACERLCPIRAGGHDCGCLHVLARLVMEQLVARL DVAMFNAVLRESADEMPTDPVSDPISDPKVLPIPAGKSSFGAGAQLKNAVGSWSRWLTDLFGIDDCESPEDNDTPFKIFHLLNALSDLMMLPFEMLADRS TRKEVCPMFGPPLIRHILCNFVPDEFNPDPTQNSILDSLDSEDVAEPEEEETLTSFPCTARATIYLPPKAASIAKIIGGGDVGGQNSSSALQTSGSTLLR KSYTSDDELEELDSPLNSIVAVDKLAAASSSNSPSLTGKGGRKVVRYQLLREVWKDGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01810			unknown protein		Lus10037001 [exp]	0	1
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	1.4	0.9105
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	6.3	0.8853
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10004776 [exp]	6.9	0.8641
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	7.7	0.8762
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	8.3	0.8274
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	9.5	0.8850
AT5G06940			Leucine-rich repeat receptor-l...		Lus10011302 [exp]	11.2	0.8600
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	12.4	0.8645
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	14.0	0.8233
AT1G27210			ARM repeat superfamily protein...		Lus10036675 [exp]	14.1	0.8307

Compare expression of checked genes

Lus10037001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.